View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7515_high_5 (Length: 375)
Name: NF7515_high_5
Description: NF7515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7515_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 40919943 - 40919590
Alignment:
| Q |
18 |
atccttcatgtacaagcaggtcaatgtggaaatcaaatcggaggaaagttttgggaggttatgtgtgatgaacatgggatagatccttcaggaagttatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40919943 |
atccttcatgtacaagcaggtcaatgtggaaatcaaattggaggaaagttttgggaggttatgtgtgatgaacatgggatagatccttcaggaagttatg |
40919844 |
T |
|
| Q |
118 |
taggaaagtcacaccttcaagttgagagagtgaatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaacc |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40919843 |
taggaaagtcacaccttcaacttgagagagtgaatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaacc |
40919744 |
T |
|
| Q |
218 |
aggtaccatggacagtttacgttctggtccatttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40919743 |
aggtaccatggacagtttacgttctggtccatttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaa |
40919644 |
T |
|
| Q |
318 |
ggacattacactgaaggagctgaacttattgattctgttcttgatattcttcga |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
40919643 |
ggacattacactgaaggagctgaacttattgattctgttcttgatgttgttcga |
40919590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 150 - 362
Target Start/End: Complemental strand, 5936642 - 5936430
Alignment:
| Q |
150 |
aatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccat |
249 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||||||||||| ||||| ||||| |||||||| || || ||||||||| | || ||||| || | |
|
|
| T |
5936642 |
aatgtgtattacaatgaagcaagtggtggaaggttcgttcctagagcggttcttatggatcttgaaccgggaacgatggacagtgtccggtctggaccgt |
5936543 |
T |
|
| Q |
250 |
ttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattga |
349 |
Q |
| |
|
|| | || ||||| || ||||||||||| |||||||| | ||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
5936542 |
acggtcagatctttagaccggataactttgtctttggacagagtggtgctggtaataactgggctaaaggacattacactgaaggcgctgagcttattga |
5936443 |
T |
|
| Q |
350 |
ttctgttcttgat |
362 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5936442 |
ttctgttcttgat |
5936430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 151 - 362
Target Start/End: Original strand, 5530570 - 5530781
Alignment:
| Q |
151 |
atgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccatt |
250 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||| | || ||||| || | |
|
|
| T |
5530570 |
atgtgtattacaatgaagcaagtggtggaagatttgttccgagagcggttcttatggatcttgaaccgggtactatggatagtatccggtctggaccgta |
5530669 |
T |
|
| Q |
251 |
tggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattgat |
350 |
Q |
| |
|
||| | || ||||| || ||||| ||||||||||| || | ||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
5530670 |
tggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggcattatactgaaggcgctgagcttattgat |
5530769 |
T |
|
| Q |
351 |
tctgttcttgat |
362 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5530770 |
tctgttcttgat |
5530781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 5923122 - 5923021
Alignment:
| Q |
261 |
tttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattgattctgttcttg |
360 |
Q |
| |
|
||||| || ||||||||||||||||| || | ||| ||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5923122 |
tttagaccggataactttgtgtttggtcagagtggtgctggtaataactgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttg |
5923023 |
T |
|
| Q |
361 |
at |
362 |
Q |
| |
|
|| |
|
|
| T |
5923022 |
at |
5923021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 150 - 362
Target Start/End: Complemental strand, 53148385 - 53148173
Alignment:
| Q |
150 |
aatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccat |
249 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||| | | |||||||| | |
|
|
| T |
53148385 |
aatgtgtattacaatgaagcttctggtggaaggtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctggtccgt |
53148286 |
T |
|
| Q |
250 |
ttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattga |
349 |
Q |
| |
|
| || || || ||| | |||||||| || |||||||||||| ||| ||||||||||||||||| ||||| ||||| || ||||| ||||| | ||||| |
|
|
| T |
53148285 |
tcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattga |
53148186 |
T |
|
| Q |
350 |
ttctgttcttgat |
362 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53148185 |
ctctgttcttgat |
53148173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 150 - 362
Target Start/End: Complemental strand, 11734393 - 11734181
Alignment:
| Q |
150 |
aatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccat |
249 |
Q |
| |
|
||||| || |||||||| |||||||||||||| |||||||| | |||||||| ||||| ||||| || ||||| ||||| | | || ||||| | |
|
|
| T |
11734393 |
aatgtttattacaatgaggcaagtggtggaaggtatgttccacgcgctgttcttatggatcttgagcctggtactatggattccgttagatccggtccgt |
11734294 |
T |
|
| Q |
250 |
ttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattga |
349 |
Q |
| |
|
|||| | || ||| | |||||||| |||||||| || || ||| ||||| ||||||||||||||||| ||||| || ||||| ||||| |||||||| |
|
|
| T |
11734293 |
ttggtcagatctttcgtcctgataattttgtgttcggtcagtctggtgctgggaataattgggctaaaggtcattataccgaaggcgctgagcttattga |
11734194 |
T |
|
| Q |
350 |
ttctgttcttgat |
362 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11734193 |
ttctgttcttgat |
11734181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 34839859 - 34839917
Alignment:
| Q |
300 |
ggtaataattgggctaaaggacattacactgaaggagctgaacttattgattctgttct |
358 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
34839859 |
ggtaacaattgggcgaaaggtcattacactgaaggcgctgaacttattgattcagttct |
34839917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 45454681 - 45454597
Alignment:
| Q |
145 |
gagtgaatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatgga |
229 |
Q |
| |
|
|||| |||||||||||||| ||||| ||| ||||||||| ||||||||||||||||| ||||| || || ||||| || ||||| |
|
|
| T |
45454681 |
gagtcaatgtgtactacaacgaagcgagttgtggaagattcgttcctagagctgttctcatggatctggagccagggactatgga |
45454597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University