View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7515_low_5 (Length: 414)

Name: NF7515_low_5
Description: NF7515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7515_low_5
NF7515_low_5
[»] chr2 (4 HSPs)
chr2 (1-240)||(26661745-26661984)
chr2 (339-400)||(26661585-26661646)
chr2 (1-62)||(26666163-26666223)
chr2 (347-387)||(6050003-6050043)
[»] chr6 (3 HSPs)
chr6 (64-239)||(21481663-21481840)
chr6 (339-400)||(21481503-21481564)
chr6 (339-400)||(19701237-19701298)
[»] scaffold0586 (1 HSPs)
scaffold0586 (339-400)||(9670-9731)
[»] chr8 (2 HSPs)
chr8 (339-400)||(10637725-10637786)
chr8 (339-400)||(32717808-32717869)
[»] chr1 (2 HSPs)
chr1 (339-400)||(22893880-22893941)
chr1 (347-387)||(44306219-44306259)
[»] chr4 (1 HSPs)
chr4 (347-387)||(13893697-13893737)
[»] chr7 (2 HSPs)
chr7 (353-400)||(13331531-13331578)
chr7 (353-400)||(13342446-13342493)
[»] chr5 (1 HSPs)
chr5 (353-400)||(5672002-5672049)
[»] chr3 (1 HSPs)
chr3 (353-400)||(15761973-15762020)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26661984 - 26661745
Alignment:
Q  1 gtataaaagttgaaaaaagaacatgttatatacttcattttcaacattagagttataacacaggcttattggttattactagcacatgctgaagttttac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661984 gtataaaagttgaaaaaagaacatgttatatacttcattttcaaaattagagttataacacaggcttattggttattactagcacatgctgaagttttac 26661885  T
Q  101 gaacaaagaattcagcgtcatggttattaacatattttgggaaaagttagaagaaggtgggttaataaaaacaagttgtctctaaccnnnnnnngcattg 200  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||        |||||    
T  26661884 gaacaaagaattcagcgttatggttattagcatattttggaaaaagttagaagaaggtggtttaataaaaacaagttgtctctaaccttttttttcattg 26661785  T
Q  201 attcatgattgggaaaaaacaagaattgccaaacagtggg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26661784 attcatgattgggaaaaaacaagaattgccaaacagtggg 26661745  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 26661646 - 26661585
Alignment:
Q  339 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 26661585  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26666223 - 26666163
Alignment:
Q  1 gtataaaagttgaaaaaagaacatgttatatacttcattttcaacattagagttataacaca 62  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  26666223 gtataaaagttgaaaaaagaacatgttatatacttca-tttcaaaattagagttataacaca 26666163  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 6050043 - 6050003
Alignment:
Q  347 tgatatcaatcaccaaatctatgttgagtaatggaagaatt 387  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6050043 tgatatcaatcaccaaatctatgttgagtaatggaagaatt 6050003  T

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Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 21481840 - 21481663
Alignment:
Q  64 gcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattaacatattttgggaaaagttagaagaaggtgggtt 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21481840 gcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattagcatattttgggaaaagttagaagaaggtgggtt 21481741  T
Q  164 aataaaaacaagttgtctct-aaccnnnnnnngcattgattcatgattggg-aaaaaacaagaattgccaaacagtgg 239  Q
    |||||||||||||||||||| |||        ||||||||||||||||||| ||||||||||||||||||||||||||    
T  21481740 aataaaaacaagttgtctctaaacttttttttgcattgattcatgattgggaaaaaaacaagaattgccaaacagtgg 21481663  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 21481564 - 21481503
Alignment:
Q  339 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 21481503  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 19701298 - 19701237
Alignment:
Q  339 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||    
T  19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattag 19701237  T

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Target: scaffold0586 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 9731 - 9670
Alignment:
Q  339 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattag 9670  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 10637786 - 10637725
Alignment:
Q  339 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattag 10637725  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 32717808 - 32717869
Alignment:
Q  339 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattag 32717869  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 22893941 - 22893880
Alignment:
Q  339 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattag 22893880  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 44306259 - 44306219
Alignment:
Q  347 tgatatcaatcaccaaatctatgttgagtaatggaagaatt 387  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  44306259 tgatatcaatgaccaaatctatgttgagtaatggaagaatt 44306219  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 13893697 - 13893737
Alignment:
Q  347 tgatatcaatcaccaaatctatgttgagtaatggaagaatt 387  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13893697 tgatatcaatcaccaaatctatgttgagtaatggaagaatt 13893737  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 13331531 - 13331578
Alignment:
Q  353 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattag 13331578  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 13342446 - 13342493
Alignment:
Q  353 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattag 13342493  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 5672002 - 5672049
Alignment:
Q  353 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattag 5672049  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 15761973 - 15762020
Alignment:
Q  353 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattag 400  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattag 15762020  T

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