View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7515_low_8 (Length: 213)
Name: NF7515_low_8
Description: NF7515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7515_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 14973052 - 14973234
Alignment:
| Q |
16 |
atgaatatagataaagaagaatttgaggatcagtctctaaagaacaagttgctggcatcttgagaaagccattcatattggtccttttaatatcttgcaa |
115 |
Q |
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| T |
14973052 |
atgagtatagataaagaagaatttgaggatcagtctctaaagaacaagttgctggcatcttgagaaagccattcatattggtccttttaatatcttgcaa |
14973151 |
T |
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| Q |
116 |
aacaagcttggaacaattaagatttattccatcttgaggggaccgttaaaagataattagttagagttatagatgttattact |
198 |
Q |
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| T |
14973152 |
aacaagcttggaacaattaagatttattccatcttgaggggaccgttaaaagataattagttaaagttatagatgttattact |
14973234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 9994409 - 9994459
Alignment:
| Q |
104 |
aatatcttgcaaaacaagcttggaacaattaagatttattccatcttgagg |
154 |
Q |
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| T |
9994409 |
aatatcttgcaggacaagcttggaacaattaacatttattccgtcttgagg |
9994459 |
T |
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