View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7516_high_1 (Length: 492)
Name: NF7516_high_1
Description: NF7516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7516_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 474
Target Start/End: Original strand, 11102835 - 11103270
Alignment:
| Q |
25 |
agttttgtttcattggtttaatgcactgttaaatttggacgaaaag-----ataacatttaagtggtattttaatcatatctcgaatgtggatcttctat |
119 |
Q |
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| T |
11102835 |
agttttgtttcattggtttaatgcactgttaaatttgggcgaaaaagtaacataacatttaagtggtattttaatcatatctcgaatgtggatcttctat |
11102934 |
T |
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| Q |
120 |
tggagtcaaattaattgtgtatgaaatctaagattcaaagctccaactttgatgaagtcgctcaaactcaatttatgaaaatgtcnnnnnnnnnnncaac |
219 |
Q |
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| T |
11102935 |
tggagtcaaattaattgtgtatgaaatctaa---------------ctttgatgaagtcgctcaaactcaatttatgaaaatgt---ttttttcttcaac |
11103016 |
T |
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| Q |
220 |
actaagcaccaaagtctacaaagttaagttctagctctacatgttaggacgctaaacgatctctttagacgctccaatcaggttgaagcgcactatgttg |
319 |
Q |
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| T |
11103017 |
actaagcgctaaagtctgcaaagttaagttctagctctacatgttaggacgttagacgacctctttagacgctccaatcagattgaggcgccctatgttg |
11103116 |
T |
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| Q |
320 |
gcttgatacactataaatacnnnnnnnnnnnnaacatacttaaggcatttttgaatcacttatgagatcataaatgtgtgccctagtagagaaacttttt |
419 |
Q |
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| T |
11103117 |
gcttgatacaatataaatacttttttgtttttaacatacttaag-catctttgaatcacttatgagatcataaatgtgtgccctagtagagaaacttttt |
11103215 |
T |
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| Q |
420 |
tgttcttcaagaattgtccctaaacaatttttatgattcttcttaccctctatct |
474 |
Q |
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| T |
11103216 |
tgttcttcaagaattgtctctaaacaatttttatgattcttcttaccctctatct |
11103270 |
T |
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