View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7516_low_2 (Length: 451)
Name: NF7516_low_2
Description: NF7516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7516_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 15277541 - 15277104
Alignment:
| Q |
1 |
ttctcttgtaccatgtgtgatcttattgttttgttgttaagaacccgccctaccaaacacagcgttgtctccatttgctcgtcaacctctactctacatc |
100 |
Q |
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| T |
15277541 |
ttctcttgtaccatgtgtgatcttattgttttgttgttaagaacccgccctaccaaacacagcgttgtctccatttgctcgtcaacctctactctacatc |
15277442 |
T |
|
| Q |
101 |
tgatgttgcttccaccgtgatctcctcttctagcgttaaccgttcaaaacaatccatgggtttgttgaaatgggatgtttgtatggttcaaagatagtat |
200 |
Q |
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| T |
15277441 |
tgatgttgcttccaccgtgatctcctcttctagcgttaaccgttcaaaacaatccatgggtttgttgaaatgggatgtttgtatggttcaaagatagtat |
15277342 |
T |
|
| Q |
201 |
catgagttgaattttgatggaaattgttggcttgctgctgtgagaaaactgctgtgaaaacaggatgtttgtctggttcaaaacaagttgttgtgtgtga |
300 |
Q |
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| T |
15277341 |
catgagttgaattttgatggaaattgttggcttgctgctgtgagaaaactgatgtgaaaacaggctgtttgtctggttcaaaacaagttgttgtgt---- |
15277246 |
T |
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| Q |
301 |
gaaacaagtgttttgtataaactgatgtgnnnnnnntgagttgctgtgtgtgaaaaactagggttttcttttcacggggatagagagccgcttctcatag |
400 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15277245 |
gaaacaagtgttttgtataaactgatgtgaaaaaaatgagttgctgtgtgtgaaaaactagggttttcttttcacggggatagagagtcgcttctcatag |
15277146 |
T |
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| Q |
401 |
agagagatacaacttaattacctagtcaataatgagaataat |
442 |
Q |
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| T |
15277145 |
agagagatacaacttaattacctggtcaataacgagaataat |
15277104 |
T |
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