View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7517_low_1 (Length: 381)
Name: NF7517_low_1
Description: NF7517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7517_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 31 - 360
Target Start/End: Original strand, 29717256 - 29717585
Alignment:
| Q |
31 |
gtgaagtatgataaaagttaaatcagccaatatgcatatatatgttgaaaaatgcatttcatagataaaatttgaaagaaaaaagtatttagtttgccat |
130 |
Q |
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| T |
29717256 |
gtgaagtatgataaaagttaaatcggccagtatgcatatatatgttgaaaaatgcatttcatagataaaatttgaaagaaaaaagtatttagtttgccat |
29717355 |
T |
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| Q |
131 |
aaaagtaactatgttgatctctttaaaaatatcactaagagaagaattacaaattgctttcatcctttacatctccattaacaatgtagtcaaaaaggga |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29717356 |
aaaagtaactatgttgatctctttaaaaatatcactaagagaagaattacaaattgctttcatcctttacatctccattaacaatgtagtcaaaaaggga |
29717455 |
T |
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| Q |
231 |
aatgttaacttttaagcactcaatccaaataagtactatgtatcactcatagactagacttggcttataaatccattgcttctccaacannnnnnnctca |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29717456 |
aatgttaacttttaagcactcaatccaaataagtactatgtatcactcatagactagacttggcttataaatccattgcttctccaacatttttttctca |
29717555 |
T |
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| Q |
331 |
catttcacattctcttcaacattcaggtcc |
360 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29717556 |
catttcacattctcttcaacattcaggtcc |
29717585 |
T |
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