View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7517_low_2 (Length: 355)
Name: NF7517_low_2
Description: NF7517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7517_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15395537 - 15395881
Alignment:
| Q |
1 |
gaggtataggtatttacaatttgtggagatttggtggcagtgtcttaagagccttttcgcctctctacgtgtatcggtatctaagagacggacacaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395537 |
gaggtataggtatttacaatttgtggagatttggtggcagtgtcttaagagccttttcgcctctctacgtgtatcggtatctaagagacggacacaaaga |
15395636 |
T |
|
| Q |
101 |
tagttggctttcccttggtggaatcttgcttagcataacaggtttgtttaattttgataacttttgatttgattagtgttttaaaattattcaataaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395637 |
tagttggctttcccttggtggaatcttgcttagcataacaggtttgtttaattttgataacttttgatttgattagtgttttaaaattattcaataagga |
15395736 |
T |
|
| Q |
201 |
aaacggttaattcaaaatcgaaaacttgtgatgattgctttcagggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaatt |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395737 |
aaaaggttaattcaaaatcgaaaacttgtgatgattgctttcagggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaatt |
15395836 |
T |
|
| Q |
301 |
gcatttactctcgtggtgtttccttgccttcttttagcatattct |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395837 |
gcatttactctcgtggtgtttccttgccttcttttagcatattct |
15395881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 3 - 345
Target Start/End: Original strand, 15387165 - 15387507
Alignment:
| Q |
3 |
ggtataggtatttacaatttgtggagatttggtggcagtgtcttaagagccttttcgcctctctacgtgtatcggtatctaagagacggacacaaagata |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15387165 |
ggtataggtatttacaatttgtggagatttggtggcagtgtcttaagagccttttcgcctctctacgtgtatcggtatctaagagacggacgcaaagata |
15387264 |
T |
|
| Q |
103 |
gttggctttcccttggtggaatcttgcttagcataacaggtttgtttaattttgataacttttgatttgattagtgttttaaaattattcaataaggtaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15387265 |
gttggctttcccttggtggaatcttgcttagcataacaggtttgtttaattttgataacttttgatttgattagtgttttaaaattattcaataaggcaa |
15387364 |
T |
|
| Q |
203 |
acggttaattcaaaatcgaaaacttgtgatgattgctttcagggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgc |
302 |
Q |
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| T |
15387365 |
atggttaattcaaaatcgaaaacttgtgatgattgctttcagggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgc |
15387464 |
T |
|
| Q |
303 |
atttactctcgtggtgtttccttgccttcttttagcatattct |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387465 |
atttactctcgtggtgtttccttgccttcttttagcatattct |
15387507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 38667321 - 38667219
Alignment:
| Q |
243 |
agggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcatttactctcgtggtgtttccttgccttcttttagcatat |
342 |
Q |
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|||||| || |||||||| |||||| || | ||||||| || ||| ||||||| ||||||||||||| || |||||||| |||||||||||||| ||| |
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| T |
38667321 |
agggacggaggctcttttcgccgacctatctcattttccggtctcagctgtacagcttgcatttactctggttgtgtttccctgccttcttttagcctat |
38667222 |
T |
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| Q |
343 |
tct |
345 |
Q |
| |
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||| |
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|
| T |
38667221 |
tct |
38667219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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