View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7517_low_3 (Length: 270)
Name: NF7517_low_3
Description: NF7517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7517_low_3 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 15395400 - 15395536
Alignment:
| Q |
134 |
ccgccttggtgttacaggagtagttgtgctgattgctgttgtaatattagttggactattcagcatacaacgttatggtacagatagagttggttggctc |
233 |
Q |
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| T |
15395400 |
ccgccttggtgttacaggagtagttgtgctggttgctgttgtaatattagttggactattcagcatacaacgttatggtacagatagagttggttggctc |
15395499 |
T |
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| Q |
234 |
tttgctccaattgttcttctttggtttcttcttattg |
270 |
Q |
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| T |
15395500 |
tttgctccaattgttctgctttggtttcttcttattg |
15395536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 140 - 270
Target Start/End: Original strand, 15387032 - 15387162
Alignment:
| Q |
140 |
tggtgttacaggagtagttgtgctgattgctgttgtaatattagttggactattcagcatacaacgttatggtacagatagagttggttggctctttgct |
239 |
Q |
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| T |
15387032 |
tggtgttacaggagtagttgtgctggttgctgttgtaatattagttggactattcagcatacaacgttatggtacagatagagttggttggctctttgct |
15387131 |
T |
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| Q |
240 |
ccaattgttcttctttggtttcttcttattg |
270 |
Q |
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| T |
15387132 |
ccaattgttctgctttggtttcttcttattg |
15387162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 15395281 - 15395353
Alignment:
| Q |
20 |
gtatgctcctacacctttaacatacattaatcttttatgtcttccactatgaatatgagattatagtttctag |
92 |
Q |
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| T |
15395281 |
gtatgctcctacacctttaacatacattaatcttttatgtcttccactatgaatatgagattatagtttctag |
15395353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 15386918 - 15386988
Alignment:
| Q |
20 |
gtatgctcctacacctttaacat-acattaatcttttatgtcttccactatgaatatgagattatagtttc |
89 |
Q |
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| T |
15386918 |
gtatggtcctacacctttaacattacattaatcttctatgtcttccacaatgtatataagattatagtttc |
15386988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 38667900 - 38667803
Alignment:
| Q |
165 |
attgctgttgtaatattagttggactattcagcatacaacgttatggtacagatagagttggttggctctttgctccaattgttcttctttggtttct |
262 |
Q |
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| T |
38667900 |
attgctgttgtaatattagttggatttttcagcctgcaacattatggcacagacaaagttagttggctctttgctccaattgtcctcctttggtttct |
38667803 |
T |
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