View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7518_high_2 (Length: 277)

Name: NF7518_high_2
Description: NF7518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7518_high_2
NF7518_high_2
[»] chr6 (5 HSPs)
chr6 (1-91)||(26229359-26229449)
chr6 (154-212)||(26229292-26229350)
chr6 (1-64)||(10172632-10172696)
chr6 (217-257)||(19292958-19292998)
chr6 (217-257)||(29968733-29968773)
[»] chr7 (5 HSPs)
chr7 (113-212)||(44970164-44970263)
chr7 (1-62)||(44970261-44970322)
chr7 (216-257)||(49017057-49017098)
chr7 (217-257)||(11907775-11907815)
chr7 (217-257)||(44970076-44970116)
[»] chr1 (4 HSPs)
chr1 (158-208)||(1787416-1787466)
chr1 (217-257)||(46671543-46671583)
chr1 (109-143)||(41502971-41503005)
chr1 (222-258)||(43671454-43671490)
[»] chr3 (2 HSPs)
chr3 (107-208)||(43410211-43410312)
chr3 (217-257)||(8541102-8541142)
[»] chr5 (1 HSPs)
chr5 (217-257)||(37022993-37023033)
[»] chr4 (2 HSPs)
chr4 (1-69)||(45071240-45071308)
chr4 (217-257)||(16204745-16204785)
[»] chr2 (1 HSPs)
chr2 (217-257)||(43822925-43822965)
[»] scaffold0648 (1 HSPs)
scaffold0648 (217-257)||(4605-4645)
[»] scaffold0274 (1 HSPs)
scaffold0274 (217-257)||(4075-4115)
[»] chr8 (1 HSPs)
chr8 (217-257)||(19779881-19779920)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 26229449 - 26229359
Alignment:
Q  1 aatagtttaaaaaagtgtacaacattgttatctggtgtagtgttaatattgctttactgatacatggggatgctggtttggatctcaccag 91  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||   ||||||||||    
T  26229449 aatagtttaaaaatatgtacaacattgttatctggtgtagtggtaatattgccttactgatacatggggatgctggttcaaatctcaccag 26229359  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 26229350 - 26229292
Alignment:
Q  154 gggaatcgaacgcatgaccttcaattcactgagggagcgcataaccacttcaacggcaa 212  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  26229350 gggaatcgaacgcgtgaccttcaattcactaagggagcggataaccacttcaacggcaa 26229292  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10172696 - 10172632
Alignment:
Q  1 aatagtttaaaaaagtgtacaacattgttatctggtgtagt-gttaatattgctttactgataca 64  Q
    ||||||||| |||| |||| |||||||||||||||| |||| | ||||||||| |||||||||||    
T  10172696 aatagtttataaaaatgtaaaacattgttatctggtctagtgggtaatattgccttactgataca 10172632  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 19292958 - 19292998
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  19292958 ggggggtgcagtggcacctgggggtctctgaagagatccgc 19292998  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 29968733 - 29968773
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  29968733 ggggggtgcagtggcacctgggggtctctaaagagatccgc 29968773  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 44970263 - 44970164
Alignment:
Q  113 ataagaaaaattctttaagaattataaaaaggagggtgtctgggaatcgaacgcatgaccttcaattcactgagggagcgcataaccacttcaacggcaa 212  Q
    ||||||||||||| |||||||||||||||||||||||| |  |||||| ||||| |||||||||||| | || ||||||||||||||||||||| |||||    
T  44970263 ataagaaaaattcgttaagaattataaaaaggagggtgccaaggaatcaaacgcgtgaccttcaatttattgggggagcgcataaccacttcaatggcaa 44970164  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44970322 - 44970261
Alignment:
Q  1 aatagtttaaaaaagtgtacaacattgttatctggtgtagtgttaatattgctttactgata 62  Q
    |||| ||||||||| |||||||||||||||| || ||||||| ||||||||| |||||||||    
T  44970322 aataatttaaaaaaatgtacaacattgttatatgatgtagtgataatattgccttactgata 44970261  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 49017057 - 49017098
Alignment:
Q  216 gggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    ||||| |||||||||||||||| ||||||| |||||||||||    
T  49017057 gggggggtgcagtggcacctgggggtctctaaagagatccgc 49017098  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 11907775 - 11907815
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| ||||||||||||||||  ||||||||||||||||||    
T  11907775 ggggggtgcagtggcacctgggagtctctgaagagatccgc 11907815  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 44970116 - 44970076
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| ||||||||||||||||  ||||||||||||||||||    
T  44970116 ggggggtgcagtggcacctgggagtctctgaagagatccgc 44970076  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 1787466 - 1787416
Alignment:
Q  158 atcgaacgcatgaccttcaattcactgagggagcgcataaccacttcaacg 208  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  1787466 atcgaacgcgtgatcttcaatttactgagggagcgcataaccacttcaacg 1787416  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 46671543 - 46671583
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  46671543 ggggggtgcagtggcacctgggggtctctgaagagatccgc 46671583  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 41503005 - 41502971
Alignment:
Q  109 taaaataagaaaaattctttaagaattataaaaag 143  Q
    ||||||||||||||||| |||||||||||||||||    
T  41503005 taaaataagaaaaattcgttaagaattataaaaag 41502971  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 43671454 - 43671490
Alignment:
Q  222 gtgcagtggcacctggtggtctctgaagagatccgct 258  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  43671454 gtgcagtggcacctgggggtctctaaagagatccgct 43671490  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 43410312 - 43410211
Alignment:
Q  107 aataaaataagaaaaattctttaagaattataaaaaggagggtgtctgggaatcgaacgcatgaccttcaattcactgagggagcgcataaccacttcaa 206  Q
    |||||||||||||||||||  ||||||||||||||||||||||||  ||| ||| |||||  |||||| ||| || ||| ||| || |||||| || |||    
T  43410312 aataaaataagaaaaattcgctaagaattataaaaaggagggtgttaggggatcaaacgcgcgacctttaatacattgatggaccgtataaccgctccaa 43410213  T
Q  207 cg 208  Q
    ||    
T  43410212 cg 43410211  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 8541142 - 8541102
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  8541142 ggggggtgcagtggcacctgggggtctctaaagagatccgc 8541102  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 37022993 - 37023033
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  37022993 ggggggtgcagtggcacctgggggtctctgaagagatccgc 37023033  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 45071308 - 45071240
Alignment:
Q  1 aatagtttaaaaaagtgtacaacattgttatctggtgtagtgttaatattgctttactgatacatgggg 69  Q
    |||||||| ||||| ||| ||||||||||| ||||||| ||| ||||||||||| | |||||| |||||    
T  45071308 aatagtttcaaaaaatgtgcaacattgttaactggtgtggtggtaatattgcttgattgatacttgggg 45071240  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 16204785 - 16204745
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  16204785 ggggggtgcagtggcacctgggggtctctaaagagatccgc 16204745  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 43822925 - 43822965
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  43822925 ggggggtgcagtggcacctgggggtctctgaagagatccgc 43822965  T

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Target: scaffold0648 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 4605 - 4645
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  4605 ggggggtgcagtggcacctgggggtctctaaagagatccgc 4645  T

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Target: scaffold0274 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 4075 - 4115
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  4075 ggggggtgcagtggcacctgggggtctctaaagagatccgc 4115  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 19779881 - 19779920
Alignment:
Q  217 ggggagtgcagtggcacctggtggtctctgaagagatccgc 257  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  19779881 ggggggtgcagtggcacctgg-ggtctctgaagagatccgc 19779920  T

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