View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7518_low_4 (Length: 250)
Name: NF7518_low_4
Description: NF7518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7518_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36442986 - 36443222
Alignment:
| Q |
1 |
atgtcgctgaaacctatagttatttagaataacacataaccataaaatgacaaaattttaaacttaaattgttgaggtttagaaaaaagcaccctcatag |
100 |
Q |
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| T |
36442986 |
atgtcgctgaaacctacagttatttagaataacacataaccataaaatgacaaaattttaaacttaaattgttgaggtttagaaaaaagcaccctcatag |
36443085 |
T |
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| Q |
101 |
gtcgacttaatccactcagattcgacaacatttttgcagtcccatgtgaattagtataaatgaggtagaagacattgaagaatgaaagtctgaaaagaat |
200 |
Q |
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| T |
36443086 |
gtcgacttaatccactcagattcgacaacatttttgcagtcccatgtgaattagtataaatgaggtagaagacattgaagaatgaaagtctgaaaagaat |
36443185 |
T |
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| Q |
201 |
tcttacgcacataaccagcataggaattcatgtcttc |
237 |
Q |
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| T |
36443186 |
tcttacgcacataaccagcataggaattcatgtcttc |
36443222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 39160703 - 39160607
Alignment:
| Q |
126 |
caacatttttgcagtcccatgtgaattagtataaatgaggtagaagacattgaagaatgaaagtctgaaaagaattcttacgcacataaccagcata |
222 |
Q |
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| T |
39160703 |
caacatttttacaaccctatttgaattagtataaatgaagtagaagacatcaaagaattgaagtctgaaaagaaatcttacctacataaccagcata |
39160607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 32898836 - 32898792
Alignment:
| Q |
24 |
ttagaataacacataaccataaaatgacaaaattttaaacttaaa |
68 |
Q |
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| T |
32898836 |
ttagaataacatataaccataaaatgatacaaatttaaacttaaa |
32898792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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