View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7519_high_3 (Length: 337)
Name: NF7519_high_3
Description: NF7519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7519_high_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 26097255 - 26096947
Alignment:
| Q |
16 |
caagattggcaaagatattagagaaaatcgcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26097255 |
caagattggcaaagatattagagaaaatcgcagttaaacgagagattatagttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcac |
26097156 |
T |
|
| Q |
116 |
caatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaaga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26097155 |
caatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaataaagtcccattttaccaaaga |
26097056 |
T |
|
| Q |
216 |
gacccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26097055 |
gacccggacaatggttttgatactgttggaaaaatggtcaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggat |
26096956 |
T |
|
| Q |
316 |
atagtgttc |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
26096955 |
atagtgttc |
26096947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 26120540 - 26120234
Alignment:
| Q |
18 |
agattggcaaagatattagagaaaatcgcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcacca |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
26120540 |
agattggcaaatttattagagaaaatcgcagttaaacgagagatcatagttacccttgcaaactcaaatgtgaaagagatcctcgagatctggttcacca |
26120441 |
T |
|
| Q |
118 |
atatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
26120440 |
atatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaatcaagtcccattttacaaaagaga |
26120341 |
T |
|
| Q |
218 |
cccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatat |
317 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||| |
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| T |
26120340 |
cccggataatggtattgatactgttggaaaaattccaaacggcgaggctgtctccagtctcaaattccgtattctaagagaatttttgcagttgggatac |
26120241 |
T |
|
| Q |
318 |
agtgttc |
324 |
Q |
| |
|
||||||| |
|
|
| T |
26120240 |
agtgttc |
26120234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 26084978 - 26084672
Alignment:
| Q |
18 |
agattggcaaagatattagagaaaatcgcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcacca |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26084978 |
agattggcaaatttattagagaaaatcgcagttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcacca |
26084879 |
T |
|
| Q |
118 |
atatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26084878 |
atatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaaattttgtgaatctaataaagtcccattttaccaaagaga |
26084779 |
T |
|
| Q |
218 |
cccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatat |
317 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| ||||||| | |||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
26084778 |
cccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatat |
26084679 |
T |
|
| Q |
318 |
agtgttc |
324 |
Q |
| |
|
||||||| |
|
|
| T |
26084678 |
agtgttc |
26084672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 26065253 - 26064947
Alignment:
| Q |
18 |
agattggcaaagatattagagaaaatcgcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcacca |
117 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |||||| || ||| ||||||||||||| ||||| ||||||||||| || ||||||||||| | |
|
|
| T |
26065253 |
agattggcaaatatattagataaaatcgcagttaaacaagagatcatagttgcccttgcaaactccaatgttaaggagatcctggaagtctggttcacta |
26065154 |
T |
|
| Q |
118 |
atatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagaga |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
26065153 |
atatcaagagagttggtatatctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaattgaatcaagtcccattttacaaaagaga |
26065054 |
T |
|
| Q |
218 |
cccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatat |
317 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||| | ||| | ||||||||||| ||| ||||||| ||||||||| |||||||||||| |||||||| |
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|
| T |
26065053 |
cccggataatggtattgatgctgttggaaaaagaggaaagagaacggctgtctccgggcttaaatttcgtattctaagggaatttttgcagctgggatat |
26064954 |
T |
|
| Q |
318 |
agtgttc |
324 |
Q |
| |
|
|| |||| |
|
|
| T |
26064953 |
agcgttc |
26064947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 26127197 - 26126891
Alignment:
| Q |
18 |
agattggcaaagatattagagaaaatcgcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcacca |
117 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| || |||||||| || ||| ||||||||||||| ||||| ||||| | |||||||||||||||||||| |
|
|
| T |
26127197 |
agattggcaaatttattagagaaaattgcagtaaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcacca |
26127098 |
T |
|
| Q |
118 |
atatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagaga |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
26127097 |
atatcaagagagtcggtatacctaattatttagttgttgccttagacgatgaaatttcaaagttttgtgaatcaaataaagtcccgttttacaaaagaga |
26126998 |
T |
|
| Q |
218 |
cccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatat |
317 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||| | | | ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
26126997 |
cccggatgatgctattgatactgttggaaaaataggagggagagcggctgtctctgggcttaaatttcgtattttaagagaatttttgcagttgggatat |
26126898 |
T |
|
| Q |
318 |
agtgttc |
324 |
Q |
| |
|
|| |||| |
|
|
| T |
26126897 |
agcgttc |
26126891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 26036607 - 26036299
Alignment:
| Q |
16 |
caagattggcaaagatattagagaaaatcgcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcac |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||| || || | |||||||| || |||||||||||||| | |||||||||||| | |
|
|
| T |
26036607 |
caagattggcaaagatattggagaaaatctcagttaaacgagagatcatagtagcacttgcaaattccaatgtgaaggagatgttagaggtctggttctc |
26036508 |
T |
|
| Q |
116 |
caatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaaga |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||| | ||| |||||||||||||| ||||| |
|
|
| T |
26036507 |
aaatatcaagagagttggtatatctaattatctagttgttgctttagacgatgagatttcaaaattttgtgaaacaaatcaagtcccattttacaaaaga |
26036408 |
T |
|
| Q |
216 |
gacccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggat |
315 |
Q |
| |
|
||||| || ||||| |||| || |||||||| | | | ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26036407 |
gacccagatgatggtattgacaccattggaaaacaaggagggaaccatgctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggat |
26036308 |
T |
|
| Q |
316 |
atagtgttc |
324 |
Q |
| |
|
|| |||||| |
|
|
| T |
26036307 |
atggtgttc |
26036299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 6773841 - 6773781
Alignment:
| Q |
103 |
aggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttaga |
163 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||| | |||||||| ||||| |
|
|
| T |
6773841 |
aggtatggttcaccaatatcaagaaggttggcatatctaattatttggttgttgcattaga |
6773781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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