View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7519_high_4 (Length: 317)

Name: NF7519_high_4
Description: NF7519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7519_high_4
NF7519_high_4
[»] chr1 (2 HSPs)
chr1 (1-256)||(35602061-35602316)
chr1 (271-314)||(35601999-35602042)
[»] chr4 (1 HSPs)
chr4 (6-149)||(40492177-40492318)
[»] chr7 (1 HSPs)
chr7 (63-152)||(17613908-17613997)
[»] chr5 (7 HSPs)
chr5 (68-149)||(11538566-11538647)
chr5 (68-149)||(11562046-11562127)
chr5 (68-149)||(11501512-11501593)
chr5 (68-149)||(11516281-11516362)
chr5 (68-149)||(11523683-11523764)
chr5 (68-149)||(11508909-11508989)
chr5 (68-149)||(11531095-11531175)
[»] scaffold0263 (1 HSPs)
scaffold0263 (6-139)||(6339-6472)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 35602316 - 35602061
Alignment:
Q  1 tcatctttaataatgggtcttttgaagtcgacgaggtggtagagaagattaaggtgcttgtgtggatttggagcttgcataggcttaaaatcggtccgag 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  35602316 tcatctttaataatgggtcttttgaagtcgatgaggtggtagagaagattaaagtgcttgtgtggatttggagcttgcatagacttaaaatcggtccgag 35602217  T
Q  101 tttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatagtttttgtgtgggatattctgttttcgaaggcttgtgggttggaagatatgg 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35602216 tttattttatgaatggtgttggaatccgcgcgaatgtcttcttagatagtttttgtgtgggatattctgttttcgaaggcttgtgggttggaagatatgg 35602117  T
Q  201 ttgtcttaagttcatgtggtgcctgtttgctgcggctatactttgttggttgctgc 256  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  35602116 ttgtcttaagttcatgtggtggttgtttgctgcggctatactttgttggttgctgc 35602061  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 35602042 - 35601999
Alignment:
Q  271 cattccttttttatggcttgcgctatcagtacttttatggtgcg 314  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  35602042 cattccttttctatggcttgcgctatcagtacttttatggtgcg 35601999  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 40492318 - 40492177
Alignment:
Q  6 tttaataatgggtcttttgaagtcgacgaggtggtagagaagattaaggtgcttgtgtggatttggagcttgcataggcttaaaatcggtccgagtttat 105  Q
    |||||||||||| ||||||| || || |||||||| || |||||||||||||| |  |||| |  ||||||| ||||||| || || ||||||||| |||    
T  40492318 tttaataatgggacttttgatgttgatgaggtggtggaaaagattaaggtgctcgcatggact--gagcttgtataggctcaatattggtccgagtctat 40492221  T
Q  106 tttatgaatggtgttggaatcctcgcgaatgtcttcttagatag 149  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  40492220 tttatgaatggtgttggaatcctcgcgaatgtcttctaagatag 40492177  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 17613908 - 17613997
Alignment:
Q  63 tggatttggagcttgcataggcttaaaatcggtccgagtttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatagttt 152  Q
    |||| ||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||| |  |||||||| ||||||||| ||||    
T  17613908 tggacttggagcttgcataggcttaagatcggtccaagtttgtattatgaatggtgttggaataccagcgaatgttttcttagatggttt 17613997  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 11538647 - 11538566
Alignment:
Q  68 ttggagcttgcataggcttaaaatcggtccgagtttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatag 149  Q
    |||||| |||||||||||||| || || ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||    
T  11538647 ttggagtttgcataggcttaagattgggccgagcttgttttatgaatggtgttggaatccccgcgagtgtcttcttagatag 11538566  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 11562127 - 11562046
Alignment:
Q  68 ttggagcttgcataggcttaaaatcggtccgagtttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatag 149  Q
    |||||| |||||||||||||| || || ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||    
T  11562127 ttggagtttgcataggcttaagattgggccgagcttgttttatgaatggtgttggaatccccgcgagtgtcttcttagatag 11562046  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 11501593 - 11501512
Alignment:
Q  68 ttggagcttgcataggcttaaaatcggtccgagtttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatag 149  Q
    |||||| |||||||||||||| || || ||||| ||  |||||||||||||||||||||| ||||| |||||| ||||||||    
T  11501593 ttggagtttgcataggcttaagattgggccgagcttgctttatgaatggtgttggaatccccgcgagtgtcttattagatag 11501512  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 11516362 - 11516281
Alignment:
Q  68 ttggagcttgcataggcttaaaatcggtccgagtttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatag 149  Q
    |||||| |||||||||||||| || || ||||| ||  |||||||||||||||||||||| ||||| |||||| ||||||||    
T  11516362 ttggagtttgcataggcttaagattgggccgagcttgctttatgaatggtgttggaatccccgcgagtgtcttattagatag 11516281  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 11523764 - 11523683
Alignment:
Q  68 ttggagcttgcataggcttaaaatcggtccgagtttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatag 149  Q
    |||||| |||||||||||||| || || ||||| ||  |||||||||||||||||||||| ||||| |||||| ||||||||    
T  11523764 ttggagtttgcataggcttaagattgggccgagcttgctttatgaatggtgttggaatccccgcgagtgtcttattagatag 11523683  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 11508989 - 11508909
Alignment:
Q  68 ttggagcttgcataggcttaaaatcggtccgagtttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatag 149  Q
    |||||| |||||||| ||||| || || ||||| ||  |||||||||||||||||||||| ||||| |||||| ||||||||    
T  11508989 ttggagtttgcatag-cttaagattgggccgagcttgctttatgaatggtgttggaatccccgcgagtgtcttattagatag 11508909  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 11531175 - 11531095
Alignment:
Q  68 ttggagcttgcataggcttaaaatcggtccgagtttattttatgaatggtgttggaatcctcgcgaatgtcttcttagatag 149  Q
    |||||| |||||||| ||||| || || ||||| ||  |||||||||||||||||||||| ||||| |||||| ||||||||    
T  11531175 ttggagtttgcatag-cttaagattgggccgagcttgctttatgaatggtgttggaatccccgcgagtgtcttattagatag 11531095  T

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Target: scaffold0263 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 6472 - 6339
Alignment:
Q  6 tttaataatgggtcttttgaagtcgacgaggtggtagagaagattaaggtgcttgtgtggatttggagcttgcataggcttaaaatcggtccgagtttat 105  Q
    |||||||||||   |||||| || || |||||||| |||||||||||||  |||   ||||||||||| |||||||| ||||  || ||||||||| | |    
T  6472 tttaataatggtaattttgaggtggatgaggtggtggagaagattaaggctctttcttggatttggagtttgcatagacttagtattggtccgagtctct 6373  T
Q  106 tttatgaatggtgttggaatcctcgcgaatgtct 139  Q
      ||||||||||||||||| || |||||||||||    
T  6372 actatgaatggtgttggaacccccgcgaatgtct 6339  T

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