View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7519_high_6 (Length: 240)
Name: NF7519_high_6
Description: NF7519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7519_high_6 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr2 (7 HSPs) |
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|
| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 9555175 - 9555397
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||| | ||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9555175 |
aaaacgcctaggtacaattggtacacaaaacaatcatgtacaagccaataaggcgcagaaacaaagtgaaacaaagaaacaacaagctagaaaatagtgt |
9555274 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9555275 |
ttaagcaagttagaggactccgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagctttgccctttc |
9555374 |
T |
|
| Q |
218 |
acctagcgttagcaagttatcct |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9555375 |
acctagcgttagcaagttatcct |
9555397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 45808810 - 45808589
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
45808810 |
aaaacgcctaggcacaatgggtacacaaaacaatcctgtacaagccaataaggcgcagaaacaaagtgaaacaaagaaacaactagctagaaaataaagt |
45808711 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |
|
|
| T |
45808710 |
ttaagcaagttagaggactctgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccacaaaaaagattgaagctttg-cctttc |
45808612 |
T |
|
| Q |
218 |
acctagcgttagcaagttatcct |
240 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
45808611 |
acctagcgttagcaaattatcct |
45808589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 27441731 - 27441536
Alignment:
| Q |
46 |
aacaatcttgtacaagccaataaggcgcaaaaataa-agtgaaacaaagaaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgcc |
144 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||| | | |||| || ||||||||||||| ||||| ||||||||| |||| |||||| ||||||| |
|
|
| T |
27441731 |
aacaatcctgtacatgccacgaaggcgcaaaaatcataaggaaagcaaaaaacaacaagctataaaattgagtttaagcaggttaaaggactccgccgcc |
27441632 |
T |
|
| Q |
145 |
attcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcacctagcgttagcaagttatcct |
240 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||||||| |||| | ||||||| |||| |
|
|
| T |
27441631 |
actcttgatagtcaaaatcaaaattaatgtatttcgatttcaaccaccaaaatgattgaagcttcaccctttcaccaagcgcttgcaagttgtcct |
27441536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 14790728 - 14790873
Alignment:
| Q |
90 |
aaagaaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaacc |
189 |
Q |
| |
|
||||||| || |||||| ||||| ||| ||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14790728 |
aaagaaaaaataagctaaaaaattgagttcaagcaggttagaggactccgccgccacacttgataatcaaaatcaaaattagtgtatttcgatttcaacc |
14790827 |
T |
|
| Q |
190 |
accaaaaagattgaagttttgccctttcacctagcgttagcaagtt |
235 |
Q |
| |
|
||||||| || |||| ||| |||||||||||| || |||||||| |
|
|
| T |
14790828 |
accaaaatgacggaagctttaccctttcacctaacgcaagcaagtt |
14790873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 43149562 - 43149616
Alignment:
| Q |
151 |
gatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaag |
205 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||||||||||| || ||||| |
|
|
| T |
43149562 |
gataatcaaaatcgaaagtagtgtatttcgatttcaaccaccaaaaggactgaag |
43149616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 11771390 - 11771336
Alignment:
| Q |
142 |
gccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaa |
196 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||||| ||| ||||| |
|
|
| T |
11771390 |
gccactcttgatagtcaaaatcaaaattaacgtatttcaatttcatccatcaaaa |
11771336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 336042 - 335821
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
336042 |
aaaacgcctaggcacaaagggtacacaaaacaatcatgtacaagccaataaggcgcagaaacaaagtgaaacaaagaaacaacaagctagaaa-taatgt |
335944 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
335943 |
ttaagcaagttagaggactccgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcagccaccaaaaagattaaagctttgccctttc |
335844 |
T |
|
| Q |
218 |
acctagcgttagcaagttatcct |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
335843 |
acctagcgttagcaagttatcct |
335821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 14489211 - 14489433
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||| | |||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14489211 |
aaaacgcctaggcacaattggtacacaaaacaatcctatacaagccaatatggctcagaaacaaagtgaaacaaagaaacaacaagctagaaaatagtgt |
14489310 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
14489311 |
ttaagcaagttagaggactccgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaaaattgaagctttgccctttc |
14489410 |
T |
|
| Q |
218 |
acctagcgttagcaagttatcct |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14489411 |
acctagcgttagcaagttatcct |
14489433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 28459579 - 28459749
Alignment:
| Q |
16 |
caaaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataat |
115 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28459579 |
caaaaacacctaggcacaatgggtacacaaaacaatcatgtacaagccaataaggcgca----------gaaacaaagaaacaacaagctagaaaataat |
28459668 |
T |
|
| Q |
116 |
gtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaa |
196 |
Q |
| |
|
|||||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28459669 |
gtttaagcaagttagaagactccttcgccatttttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaa |
28459749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 8845378 - 8845183
Alignment:
| Q |
46 |
aacaatcttgtacaagccaataaggcgcaaaaataa--agtgaaacaaagaaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgc |
143 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||| | | | |||||||||| |||||||||| ||||| ||||||||| |||| |||||| |||||| |
|
|
| T |
8845378 |
aacaatcctgtacatgccacgaaggcgcaaaaatcacaaataaaacaaagaa-caacaagctataaaattgagtttaagcaggttaaaggactccgccgc |
8845280 |
T |
|
| Q |
144 |
cattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcacctagcgttagcaagttatcct |
240 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| || |||||||||| |||| | ||||||| |||| |
|
|
| T |
8845279 |
cactcttgatagtcaaaatcaaaattaacgtatttcgatttcaaccaccaaaatgacttaagcttcaccctttcaccaagcgcttgcaagttgtcct |
8845183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 24452875 - 24452953
Alignment:
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaa |
196 |
Q |
| |
|
||||||||| || |||||| |||||||| |||||| |||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
24452875 |
ttaagcaagctacaggactctgccgccataattgataatcaaaatcgaaagtaacatatttcgatttcaaccaccaaaa |
24452953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 477655 - 477877
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
477655 |
aaaacgcctaggcacaatgggtacacaaaacaatcctgtacaagccaataaggcgcagaaacaaagtgaaacaaagaaacaactagctagaaaataaagt |
477754 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
477755 |
ttaagcaagttagaggattccgccgccattcttgatagtcaaagtcaaaattagtgtatttcgatttcaaccatcaaaaagattgaagctttgccctttc |
477854 |
T |
|
| Q |
218 |
acctagcgttagcaagttatcct |
240 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
477855 |
acccagcgttagcaagttatcct |
477877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 15831213 - 15830992
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| || || |||| ||||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15831213 |
aaaacgcctagccacaatgagtacacaaaacaatcctgtacaagccaa-aaggcgcagaaacaaagtgaaacaaagaaacaacaagctagaaaataatgt |
15831115 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15831114 |
ttaagcaagttagaggactccgccgccattcgtgatagtcaaaatcaaagttagtgtatttcgatttcaaccaccaaaaagattgaagctttgccctttc |
15831015 |
T |
|
| Q |
218 |
acctagcgttagcaagttatcct |
240 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
15831014 |
acctagctttagcaagttatcct |
15830992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 19337337 - 19337416
Alignment:
| Q |
116 |
gtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaa |
195 |
Q |
| |
|
|||||| |||| || |||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
19337337 |
gtttaaacaagctaaaggactccgccgccacgattgataatcaaaatcaaaaatagcatattttgatttcaaccaccaaa |
19337416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 32004203 - 32003982
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaa-gccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatg |
116 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||| ||||||| |||||||||||||| ||| | ||||||||||||||||| ||||||||||||| | |
|
|
| T |
32004203 |
aaaacgcctaggcacaaatggtacacaaaacaatcctgtacaaagccaataaggcgcagaaaca--gtgaaacaaagaaacaattagctagaaaataaag |
32004106 |
T |
|
| Q |
117 |
tttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgcccttt |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32004105 |
tttaagcaagttagaggactccgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagctttgcccttt |
32004006 |
T |
|
| Q |
217 |
cacctagcgttagcaagttatcct |
240 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32004005 |
cacctagcgttagcaagttatcct |
32003982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 8238252 - 8238450
Alignment:
| Q |
43 |
caaaacaatcttgtacaagccaataaggcgcaaaaat--aaagtgaaacaaagaaacaacaagctagaaaataatgtttaagcaagttagaggactgcgc |
140 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||| ||| |||||||||| ||| |||||| ||||| ||||||||||||| |||||||| || |
|
|
| T |
8238252 |
caaaacaatcctgtacaagccaagaaggcgcacaaaccaaaacgaaaacaaagaa-caaaaagctataaaattgtgtttaagcaagtgagaggactctgc |
8238350 |
T |
|
| Q |
141 |
cgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcacctagcgttagcaagttatcct |
240 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||||||||||||||| | || || ||||| || |||||||||| |||| || ||| ||||||| |
|
|
| T |
8238351 |
cgccattcttgataatgaaaatcaaaattaatgtatttcgatttcaaccactagaatgactgaagcttcaccctttcaccaagcgctaacaaattatcct |
8238450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 8552711 - 8552570
Alignment:
| Q |
94 |
aaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccacca |
193 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||| |||||| ||||||||||||||||||| ||| || ||||| ||||||||||||||||||||| |
|
|
| T |
8552711 |
aaacaacaagctataaaattgagtttaagcaggttaaaggactccgccgccattcttgatagttgaaaacacaattaaagtatttcgatttcaaccacca |
8552612 |
T |
|
| Q |
194 |
aaaagattgaagttttgccctttcacctagcgttagcaagtt |
235 |
Q |
| |
|
||| || ||||||| |||||||||| |||| | ||||||| |
|
|
| T |
8552611 |
aaatgaccgaagtttcaccctttcaccaagcgcttgcaagtt |
8552570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 41768655 - 41768552
Alignment:
| Q |
119 |
taagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttca |
218 |
Q |
| |
|
|||||| |||| |||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
41768655 |
taagcaggttaaaggactctgccgccacgtttgataatcaaaatcaaaattagcatatttcgatttcaaccaccaaaatgaatgaagttttaccctttca |
41768556 |
T |
|
| Q |
219 |
ccta |
222 |
Q |
| |
|
|||| |
|
|
| T |
41768555 |
ccta |
41768552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 39755464 - 39755676
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||| |||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39755464 |
aaaacgcctaggcacaattggtacacaaaacaatcctgtacaagccaatatggtgcagaaacaaagtgaaacaaagaaacaacaagctagaaaatagtgt |
39755563 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
39755564 |
ttaagcaagttagaggactccaccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccacc--aaagattgaagctttgccctttc |
39755661 |
T |
|
| Q |
218 |
acctagcgttagcaa |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39755662 |
acctagcgttagcaa |
39755676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 43345855 - 43345660
Alignment:
| Q |
46 |
aacaatcttgtacaagccaataaggcgcaaaaataa-agtgaaacaaagaaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgcc |
144 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||| | | |||| || ||||||||||||| ||||| ||| ||||| |||| | |||| |||| || |
|
|
| T |
43345855 |
aacaatcctgtacatgccacgaaggcgcaaaaatcacaaagaaaacaaaaaacaacaagctataaaattgagttcaagcaggttaaatgactccgcctcc |
43345756 |
T |
|
| Q |
145 |
attcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcacctagcgttagcaagttatcct |
240 |
Q |
| |
|
| |||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||| |||| | |||||||||||| |
|
|
| T |
43345755 |
actcttgatagtcaaaatcaaaattaacttattttgatttcaaccaccaaaatgactgaagcttcactctttcaccaagcgcttgcaagttatcct |
43345660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 25914027 - 25913904
Alignment:
| Q |
117 |
tttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgcccttt |
216 |
Q |
| |
|
|||||||||| || ||| || ||||||||| ||| || || ||||||||| || |||||||||||||||||||||||| | ||||| || |||||| |
|
|
| T |
25914027 |
tttaagcaaggtaaaggcctccgccgccatgattggtaatcgaaatcaaaaatatcatatttcgatttcaaccaccaaaaaaactgaagcttcacccttt |
25913928 |
T |
|
| Q |
217 |
cacctagcgttagcaagttatcct |
240 |
Q |
| |
|
| | ||||| | ||||||||||| |
|
|
| T |
25913927 |
cgcttagcgccaacaagttatcct |
25913904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 21015232 - 21015444
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
21015232 |
aaaacgcctaggcacaatgggtacacaaaacaatcatgtacaagtcaataaggcgca----------gaaacaaagaaacaactagctagaaaataaagt |
21015321 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21015322 |
ttaagcaagttagaggactccaccgccattcttgatagtcaaaatcaaaattaatgtatttcgatttcaaccaccaaaaagattgaagctttgccctttc |
21015421 |
T |
|
| Q |
218 |
acctagcgttagcaagttatcct |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21015422 |
acctagcgttagcaagttatcct |
21015444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 21072297 - 21072085
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||||| |||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
21072297 |
aaaacgcctaggcacaatgggaacataaaacaatcatgtacaagccaataaggcgca----------gaaacaaagaaacaactagctagaaaataaagt |
21072208 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21072207 |
ttaagcaagttagaggactccgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttaccctttc |
21072108 |
T |
|
| Q |
218 |
acctagcgttagcaagttatcct |
240 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
21072107 |
acccagcgttagcaagttatcct |
21072085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 2626854 - 2626766
Alignment:
| Q |
147 |
tcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcacctagcgttagcaagtt |
235 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||| || |||||||| |
|
|
| T |
2626854 |
tcttgataaacaaaatcaaaattagtgtatttcgatttcaaccaccaaaatgactgaagcttttccctttcacctaacgcaagcaagtt |
2626766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 26318649 - 26318496
Alignment:
| Q |
86 |
aaacaaagaaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttc |
185 |
Q |
| |
|
|||||||||| | |||||||||||||| |||||||||||||| |||||| ||| |||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26318649 |
aaacaaagaa-ctacaagctagaaaattgagtttaagcaagttaaaggactccgctgccatttttgatagtcaaaatcaaaattaacgtatttcgatttc |
26318551 |
T |
|
| Q |
186 |
aaccaccaaaaagattgaagttttgccctttcacctagcgttagcaagttatcct |
240 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
26318550 |
aaccaccaaaaagattgaagctttgccctttcacctagcgctagcaaattatcct |
26318496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 8567829 - 8567718
Alignment:
| Q |
94 |
aaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccacca |
193 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
8567829 |
aaacaacaagctataaaattgagtttaagcaggttaaaggacttcgccgccattcttgataggtgaaatcaaaattaatgtatttcgatttcaaccacca |
8567730 |
T |
|
| Q |
194 |
aaaagattgaag |
205 |
Q |
| |
|
||| || ||||| |
|
|
| T |
8567729 |
aaatgactgaag |
8567718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 6520418 - 6520277
Alignment:
| Q |
94 |
aaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccacca |
193 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||| |||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
6520418 |
aaacaacaagctataaaattgagtttaagcaggttaaaggactctgccgccattcttgatagttgaaaacaaaattaacgtatttcgatttcaaccacca |
6520319 |
T |
|
| Q |
194 |
aaaagattgaagttttgccctttcacctagcgttagcaagtt |
235 |
Q |
| |
|
||| || ||||| || |||||||||| |||| | ||||||| |
|
|
| T |
6520318 |
aaatgactgaagcttcaccctttcaccaagcgcttgcaagtt |
6520277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 37151195 - 37151350
Alignment:
| Q |
18 |
aaaacgcccaggcataatgggtacacaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataatgt |
117 |
Q |
| |
|
|||||||| ||||| || ||||||||| ||||| ||||||||| |||| |||||||||| ||| ||| ||| ||||||||||||||| || | |
|
|
| T |
37151195 |
aaaacgcctaggcacaaaaggtacacaat-caatcatgtacaagctaatatggcgcaaaaaccaag--aaaataaggaacaacaagctagaagattgaat |
37151291 |
T |
|
| Q |
118 |
ttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtat |
176 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37151292 |
ttaagcaagttagaggatttcgccgccattcttgatggtcaaaatcaaaattagtgtat |
37151350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 9946240 - 9946313
Alignment:
| Q |
42 |
acaaaacaatcttgtacaagccaataaggcgcaaaaataaagtgaaacaaagaaacaacaagctagaaaataat |
115 |
Q |
| |
|
||||||||||| ||||||| |||||| ||| || ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9946240 |
acaaaacaatcctgtacaaaccaatatggcacagaaacaaagtgaaacaaagaaaaaacaagctagaaaataat |
9946313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 16862566 - 16862467
Alignment:
| Q |
120 |
aagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcac |
219 |
Q |
| |
|
|||||| ||| |||||| |||||||| ||| ||||||||||| ||| ||| |||||| || ||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
16862566 |
aagcaaattaaaggactctgccgccataattggtagtcaaaatcgaaagtagcgtattttgacttcaaccaccaaaaagactgaagcttcaccctttcac |
16862467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 9880454 - 9880384
Alignment:
| Q |
149 |
ttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcac |
219 |
Q |
| |
|
|||||| |||||||| ||| || |||||||||||||||||||||||| || ||||| || ||||||||| |
|
|
| T |
9880454 |
ttgataatcaaaatcgaaagtaacgtatttcgatttcaaccaccaaaatgactgaagcttcaccctttcac |
9880384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 34373451 - 34373378
Alignment:
| Q |
167 |
attagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcacctagcgttagcaagttatcct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34373451 |
attagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctttcacctagcgttagcaagttatcct |
34373378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 12952241 - 12952117
Alignment:
| Q |
116 |
gtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccaccaaaaagattgaagttttgccctt |
215 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||||| ||||||||||||||| | ||||| ||||||||||||||||| || ||||| ||| ||||| |
|
|
| T |
12952241 |
gtttaagcaagttaaaggactccgccgccacatttgataatcaaaatcaaaattattatattttgatttcaaccaccaaaatgactgaagctttaccctt |
12952142 |
T |
|
| Q |
216 |
tcacctagcgttagcaagttatcct |
240 |
Q |
| |
|
||||||| || |||||||| |||| |
|
|
| T |
12952141 |
tcacctaacgcaagcaagttgtcct |
12952117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 234
Target Start/End: Original strand, 13239994 - 13240134
Alignment:
| Q |
94 |
aaacaacaagctagaaaataatgtttaagcaagttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccacca |
193 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||| |||| | ||||||||||||||||||| |||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
13239994 |
aaacaacaagctataaaattgagtttaagcaggttaaaggattccgccgccattcttgatagttgaaattaaaattaatgtatttcgatttcaacaacca |
13240093 |
T |
|
| Q |
194 |
aaaagattgaagttttgccctttcacctagcgttagcaagt |
234 |
Q |
| |
|
||| || ||||| || || ||||||| |||| | |||||| |
|
|
| T |
13240094 |
aaatgactgaagcttcaccatttcaccaagcgcttgcaagt |
13240134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 12413625 - 12413692
Alignment:
| Q |
126 |
gttagaggactgcgccgccattcttgatagtcaaaatcaaaattagtgtatttcgatttcaaccacca |
193 |
Q |
| |
|
|||| |||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12413625 |
gttaaaggactctgccgccacacttgataatcaaaatcaaaattagcgtatttcgatttcaaccacca |
12413692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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