View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7519_low_1 (Length: 553)
Name: NF7519_low_1
Description: NF7519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7519_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 15 - 534
Target Start/End: Original strand, 5125309 - 5125828
Alignment:
| Q |
15 |
aatattttatacggtgtttgacttttgtgcatctaaataacacatctcaacataaaaagtgaaatatttaagtaaactaattagtcggagttacatgatt |
114 |
Q |
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| T |
5125309 |
aatattttatacggtgtttaacttttgtgcatctaaataacacatctcaacataaaaagtgaaatatttaagtaaactaattagtcgttgttacatgatt |
5125408 |
T |
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| Q |
115 |
ataattgcatctcaaaataatttcaatttttagatcaaaagaaagaaagaaaataccactatttttacattcatatctataaccagtcaattattggtct |
214 |
Q |
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| T |
5125409 |
ataattgcatctcaaaataatttcaatttttagatcaaaagaaagaaagaaaataccactatttttacattgatatctataaccagtcaattattggtct |
5125508 |
T |
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| Q |
215 |
ctttacatagaaagtttgtccaaagcatggaaagaaagaagtacacaaccttacaattcaaaatgcttacacatttcaacaaagaacttttgcacacctt |
314 |
Q |
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| T |
5125509 |
ctttacatagaaagtttgtccaaagcatggaaagaaagaagtacacaaccttacaattcaaaatgcttacacatttcaacaaagaacttttgcacacctt |
5125608 |
T |
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| Q |
315 |
gcagattgaatcatcatcaacatcttcacatataatccatatctttaacatatggtcaaaactttttggcaagcacaattgtttgtgttatgagacttaa |
414 |
Q |
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| T |
5125609 |
gcagattgaatcatcatcaacatcttcacatataatccatctctttaacatatggtcaaaactttttggcaagcacaattgtttgtgttatgagacttaa |
5125708 |
T |
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| Q |
415 |
caatcaatagaaatacaagtctgagagatggctgaactatcaactttgctcacaaatggattaatcttaacccaaatgagtgagaagacagaggccaaaa |
514 |
Q |
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| T |
5125709 |
caatcaatagaaatacaagtctgagagatggctgaactatcaactttgctcacaaatggattaatcttaacccaaataagtgagaagacagaggccaaaa |
5125808 |
T |
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| Q |
515 |
gcactgaccaaagaataaca |
534 |
Q |
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| T |
5125809 |
gcactgaccaaagaataaca |
5125828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 534
Target Start/End: Original strand, 35923688 - 35923768
Alignment:
| Q |
454 |
tcaactttgctcacaaatggattaatcttaacccaaatgagtgagaagacagaggccaaaagcactgaccaaagaataaca |
534 |
Q |
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| T |
35923688 |
tcaactttgttcacaaatgggtctatcttgacccaaataatagaaaagacagaggctaacaacactgaccacagaataaca |
35923768 |
T |
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