View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7519_low_2 (Length: 507)
Name: NF7519_low_2
Description: NF7519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7519_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Original strand, 7025442 - 7025900
Alignment:
| Q |
15 |
ataactaacacttgattataagataatgcattgtatatgaatttaagaagtgaaaatttattacctctaaatctcagtaatacaatctacgttgaataac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7025442 |
ataactaacacttgattataagataatgcattgtatatgaatttaagaagtgaaaatttattacctctaaatctcagtaatacaatctacgttgaataac |
7025541 |
T |
|
| Q |
115 |
ttcctgaaacaatcagattaaaaaa-caatgaaaattaatattcataacactgcccaaaaacatgcacaagtaatctcaatagagcaaacccagttgnnn |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7025542 |
ttcctgaaacaatcagattaaaaaaacaatgaaaattaatattcataacactgcccaaaaacatgcacaagtaatctcaatagagcaaacccagttgaaa |
7025641 |
T |
|
| Q |
214 |
nnnnnnnnnnnctgaaactacccaattgaattcaattacataacaaatcttcaaagtcaatcacagatcaataaatcgatctaaaaatttcatttttaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7025642 |
aaaaataaaaactgaaactacccaattgaattcaattacataacaaatcttcaaagtcaatcacagatcaataaatcgatctaaaaatttcatttttaat |
7025741 |
T |
|
| Q |
314 |
gtaaattcaattcccagaagatccccaattgaagaaaaattcagagttctataatcagtatttgaatcaaccggtacatacccgattgaagaaaattgac |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7025742 |
gtaaattcaattcccagaagatccccaattgaagaaaaattcagagttctataatcagtatttgaatcaaccgatacatacccgattgaagaaaattgac |
7025841 |
T |
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| Q |
414 |
aaacaatcaaacgtaagatcgatcttagaacatcggagaatcagaaagaaaaatcaatg |
472 |
Q |
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| T |
7025842 |
aaacaatcaaacgtaagatcgatcttagaacatcggagaatcagaaagaaaaatcaatg |
7025900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Original strand, 7040175 - 7040633
Alignment:
| Q |
15 |
ataactaacacttgattataagataatgcattgtatatgaatttaagaagtgaaaatttattacctctaaatctcagtaatacaatctacgttgaataac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7040175 |
ataactaacacttgattataagataatgcattgtatatgaatttaagaagtgaaaatttattacctctaaatctcagtaatacaatctacgttgaataac |
7040274 |
T |
|
| Q |
115 |
ttcctgaaacaatcagattaaaaaa-caatgaaaattaatattcataacactgcccaaaaacatgcacaagtaatctcaatagagcaaacccagttgnnn |
213 |
Q |
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| T |
7040275 |
ttcctgaaacaatcagattaaaaaaacaatgaaaattaatattcataacactgcccaaaaacatgcacaagtaatctcaatagagcaaacccagttgaaa |
7040374 |
T |
|
| Q |
214 |
nnnnnnnnnnnctgaaactacccaattgaattcaattacataacaaatcttcaaagtcaatcacagatcaataaatcgatctaaaaatttcatttttaat |
313 |
Q |
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| T |
7040375 |
aaaaataaaaactgaaactacccaattgaattcaattacataacaaatcttcaaagtcaatcacagatcaataaatcgatctaaaaatttcatttttaat |
7040474 |
T |
|
| Q |
314 |
gtaaattcaattcccagaagatccccaattgaagaaaaattcagagttctataatcagtatttgaatcaaccggtacatacccgattgaagaaaattgac |
413 |
Q |
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| T |
7040475 |
gtaaattcaattcccagaagatccccaattgaagaaaaattcagagttctataatcagtatttgaatcaaccgatacatacccgattgaagaaaattgac |
7040574 |
T |
|
| Q |
414 |
aaacaatcaaacgtaagatcgatcttagaacatcggagaatcagaaagaaaaatcaatg |
472 |
Q |
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| T |
7040575 |
aaacaatcaaacgtaagatcgatcttagaacatcggagaatcagaaagaaaaatcaatg |
7040633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 37 - 464
Target Start/End: Original strand, 13435141 - 13435524
Alignment:
| Q |
37 |
ataatgcattgtatatgaatttaagaagtgaaaatttattacctctaaatctcagtaatacaatctacgttgaataacttcctgaaacaatcagattaaa |
136 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| || |
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| T |
13435141 |
ataatgcattgcatatgaatttaacaagtaaaaatttattacctctaaatctcattaatacaatctatgttgaataacttcatg---------------- |
13435224 |
T |
|
| Q |
137 |
aaacaatgaaaattaatattcataacactgcccaaaaacatgcacaagtaatctcaatagagcaaacccagttgnnnnnnnnnnnnnnctgaaactaccc |
236 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||||||||| | ||||||||| |
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| T |
13435225 |
aaacaatgaaaattaatat---caacactgtccaaaaacatgcacaagtaatcttaatagaacaaacccagttgaagaaaaacaaaat-taaaactaccc |
13435320 |
T |
|
| Q |
237 |
aattgaattcaattacataacaaatcttcaaagtcaatcacagatcaataaatcgatctaaaaatttcatttttaatgtaaattcaattcccagaagatc |
336 |
Q |
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| T |
13435321 |
agttgaattcaactacataacaaagcttcaaagtcaatcacagttcagaaaatcgatctaaaagtttaatttttaataaaaattca-------------- |
13435406 |
T |
|
| Q |
337 |
cccaattgaagaaaaattcagagttc-tataatcagtatttgaatcaaccggtacatacccgattgaagaaaattgacaaacaatcaaacgtaagatcga |
435 |
Q |
| |
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|||||||||||||||| | ||||| |||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||||| ||| |
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| T |
13435407 |
--caattgaagaaaaattaaaagttcatataatcagtatttgagtcaatcgatacgtacccgattgaagaaaattgacaaacaatcaa---------cga |
13435495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 233 - 464
Target Start/End: Complemental strand, 14831406 - 14831191
Alignment:
| Q |
233 |
acccaattgaattcaattacataacaaatcttcaaagtcaatcacagatcaataaatcgatctaaaaatttcatttttaatgtaaattcaattcccagaa |
332 |
Q |
| |
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||||| |||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||| ||| ||||||||| ||||||| |
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| T |
14831406 |
acccagttgaattcaattacataaaaaagcttcaaagacaatcacagatcagaaaatcgatctaaaagtttaatttttaatataaattc----------- |
14831318 |
T |
|
| Q |
333 |
gatccccaattgaagaaaaattcagagttc-tataatcagtatttgaatcaaccggtacatacccgattgaagaaaattgacaaacaatcaaacgtaaga |
431 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
14831317 |
-----ccaattgaagaataattcagagttcatataatcagtatttgaggcaatcgatacgtacccgattgaagaaaattgacaaacaatc-aacgtaaga |
14831224 |
T |
|
| Q |
432 |
tcgatcttagaacatcggagaatcagaaagaaa |
464 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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|
| T |
14831223 |
tcgatcttagaacatcggagaatcagatagaaa |
14831191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 14831539 - 14831453
Alignment:
| Q |
41 |
tgcattgtatatgaatttaagaagtgaaaatttattacctctaaatctcagtaatacaatctacgttgaataacttcctgaaacaat |
127 |
Q |
| |
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||||||| |||||| ||||| ||||||||||||| ||||||||||||| || ||||||| |||||||||||| |||||| ||||||| |
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| T |
14831539 |
tgcattgcatatgagtttaacaagtgaaaatttactacctctaaatcttagcaatacaacctacgttgaatagcttcctcaaacaat |
14831453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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