View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7519_low_5 (Length: 295)

Name: NF7519_low_5
Description: NF7519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7519_low_5
NF7519_low_5
[»] chr4 (4 HSPs)
chr4 (12-277)||(14350018-14350284)
chr4 (13-59)||(18404845-18404891)
chr4 (13-62)||(16581761-16581810)
chr4 (18-62)||(51954187-51954231)
[»] chr1 (4 HSPs)
chr1 (27-62)||(40257481-40257516)
chr1 (22-59)||(7129616-7129653)
chr1 (29-62)||(31297307-31297340)
chr1 (30-62)||(10526908-10526940)
[»] chr2 (3 HSPs)
chr2 (12-62)||(35203342-35203392)
chr2 (28-61)||(31159597-31159630)
chr2 (13-62)||(42222949-42222998)
[»] chr7 (1 HSPs)
chr7 (29-62)||(15905633-15905666)
[»] chr6 (1 HSPs)
chr6 (33-62)||(20678038-20678067)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 14350284 - 14350018
Alignment:
Q  12 tgttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaatacgtgttactgattcgggaggggcacaccaaataattcggtttacatt 111  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350284 tgttctattatctcaggtgtcaatttgggtgggttaatttaacttcttcaatacgtgttactgattcgggaggggcacaccaaataattcggtttacatt 14350185  T
Q  112 ttatactaagatgtcaagatgtgataaagat-atgttttcaattgatagttagatttacatatcacatttttattgtagttagttaatagttgttacaaa 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350184 ttatactaagatgtcaagatgtgataaagattatgttttcaattgatagttagatttacatatcacatttttattgtagttagttaatagttgttacaaa 14350085  T
Q  211 cttagtttaaacttagatacaactgagttagtttgttcgcaatatgaatacatgtgatgtgtataat 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350084 cttagtttaaacttagatacaactgagttagtttgttcgcaatatgaatacatgtgatgtgtataat 14350018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 18404891 - 18404845
Alignment:
Q  13 gttctattatcttaggtgtcaatttgggtgggttagtttagcttctt 59  Q
    |||| ||||||| ||||||||||||  ||||||||||||||||||||    
T  18404891 gttcgattatctaaggtgtcaatttaagtgggttagtttagcttctt 18404845  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 16581761 - 16581810
Alignment:
Q  13 gttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 62  Q
    ||||||||||||  |||| ||||||| | |||||||||||||||||||||    
T  16581761 gttctattatctctggtgccaatttgagagggttagtttagcttcttcaa 16581810  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 51954187 - 51954231
Alignment:
Q  18 attatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 62  Q
    |||||||  |||||||||||||||||| || ||||||||||||||    
T  51954187 attatctccggtgtcaatttgggtgggctaatttagcttcttcaa 51954231  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 40257481 - 40257516
Alignment:
Q  27 ggtgtcaatttgggtgggttagtttagcttcttcaa 62  Q
    |||||||||||||||||| |||||||||||||||||    
T  40257481 ggtgtcaatttgggtgggctagtttagcttcttcaa 40257516  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 7129653 - 7129616
Alignment:
Q  22 tcttaggtgtcaatttgggtgggttagtttagcttctt 59  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  7129653 tcttcggtgtcaatttaggtgggttagtttagcttctt 7129616  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 31297307 - 31297340
Alignment:
Q  29 tgtcaatttgggtgggttagtttagcttcttcaa 62  Q
    |||||||||||||||||||||||| |||||||||    
T  31297307 tgtcaatttgggtgggttagtttaacttcttcaa 31297340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 10526908 - 10526940
Alignment:
Q  30 gtcaatttgggtgggttagtttagcttcttcaa 62  Q
    |||||||||||||||||| ||||||||||||||    
T  10526908 gtcaatttgggtgggttaatttagcttcttcaa 10526940  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 35203392 - 35203342
Alignment:
Q  12 tgttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 62  Q
    ||||| |||||||| |||||||||||  |||||||| ||||||||||||||    
T  35203392 tgttcgattatctttggtgtcaatttaagtgggttaatttagcttcttcaa 35203342  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 31159630 - 31159597
Alignment:
Q  28 gtgtcaatttgggtgggttagtttagcttcttca 61  Q
    ||||||||||||||||| ||||||||||||||||    
T  31159630 gtgtcaatttgggtgggctagtttagcttcttca 31159597  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 42222949 - 42222998
Alignment:
Q  13 gttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 62  Q
    |||| ||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  42222949 gttcgattctcttcggtgtcaatttgggtgggttaatttagattcttcaa 42222998  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 15905666 - 15905633
Alignment:
Q  29 tgtcaatttgggtgggttagtttagcttcttcaa 62  Q
    ||||||||||||||||||| ||||||||||||||    
T  15905666 tgtcaatttgggtgggttaatttagcttcttcaa 15905633  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 20678067 - 20678038
Alignment:
Q  33 aatttgggtgggttagtttagcttcttcaa 62  Q
    ||||||||||||||||||||||||||||||    
T  20678067 aatttgggtgggttagtttagcttcttcaa 20678038  T

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