View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7519_low_7 (Length: 265)
Name: NF7519_low_7
Description: NF7519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7519_low_7 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 2773460 - 2773571
Alignment:
| Q |
154 |
ttaattaaattggcaaatgtatgagatacctgagtcgattgtttcttgtgccaacgtggacagcaatttggatcctccatttacagctcaaagataacgt |
253 |
Q |
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| T |
2773460 |
ttaattaaattggcaaatgtatgagatacctgagtcgattgtttcttgtgccaatgtggacagcaatttggatcctccatttacagctcaaagataacgt |
2773559 |
T |
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| Q |
254 |
attttgttcttc |
265 |
Q |
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| T |
2773560 |
attttgttcttc |
2773571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 265
Target Start/End: Original strand, 2751534 - 2751666
Alignment:
| Q |
132 |
gtgatgcttcattgaactttgtttaattaaattggcaaatgtatgagatacctgagtcgattgtttcttgtgccaacgtggacagcaatttggatcctcc |
231 |
Q |
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| T |
2751534 |
gtgattcttcattgaactt-gtttagttaacttgacaactgtatgtgatacctgactcaattgtttcttgtgtgaaggtggacagaaattcagattctcc |
2751632 |
T |
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| Q |
232 |
atttacagctcaaagataacgtattttgttcttc |
265 |
Q |
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| T |
2751633 |
atttacagctcaaagatgacgtaatttgttcttc |
2751666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 2821030 - 2821103
Alignment:
| Q |
151 |
tgtttaattaaattggcaaatgtatgagatacctgagtcgattgtttcttgtgccaacgtggacagcaatttgg |
224 |
Q |
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| T |
2821030 |
tgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagcaatttgg |
2821103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 5415268 - 5415308
Alignment:
| Q |
226 |
tcctccat-ttacagctcaaagataacgtattttgttcttc |
265 |
Q |
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| T |
5415268 |
tcctccatgttacagctcaaagataacgtattttgttcttc |
5415308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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