View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7519_low_9 (Length: 233)
Name: NF7519_low_9
Description: NF7519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7519_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7026204 - 7025970
Alignment:
| Q |
1 |
cgataacgatac--agctaaaatggcataattctcatctatatttttattagaccaaataattattattgatatatactttttgaccaaaatattattga |
98 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7026204 |
cgataacgatacgtagctaaaatgacataattctcatctatatttttattagaccaaataattattattgatatatactttttgaccaaaatattattga |
7026105 |
T |
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| Q |
99 |
aatattctcaaaaatcataattttgacttaatataactttttataataaccatgacgctaacctagttactatagtgggtaaggggcatgtatattccca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7026104 |
aatattctcaaaaatcataattttgacttaatataactttttataataaccatgatgctaacctagttactatagtgggtaaggggcatgtatattccca |
7026005 |
T |
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| Q |
199 |
ttgcttataaggctattaaagcctccccaagctca |
233 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
7026004 |
ttgcttataaggctattaaagcctccccaagctca |
7025970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 7040923 - 7040703
Alignment:
| Q |
13 |
agctaaaatggcataattctcatctatatttttattagaccaaataattattattgatatatactttttgaccaaaatattattgaaatattctcaaaaa |
112 |
Q |
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| T |
7040923 |
agctaaaatgacataattctcatctatatttttattagaccaaataataattattgatatatactttttgaccaaaatattattgaaatattctcaaaaa |
7040824 |
T |
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| Q |
113 |
tcataattttgacttaatataactttttataataaccatgacgctaacctagttactatagtgggtaaggggcatgtatattcccattgcttataaggct |
212 |
Q |
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| T |
7040823 |
tcataattttgacttaatataactttttataataaccatgatgctaacctagttactatagtgggtaaggggcatgtatattcccattgcttataaggct |
7040724 |
T |
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| Q |
213 |
attaaagcctccccaagctca |
233 |
Q |
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| T |
7040723 |
attaaagcctccccaagctca |
7040703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 14830902 - 14831048
Alignment:
| Q |
15 |
ctaaaatggcataattctcatctatatttttattagaccaaataattattattgatatatactttttgaccaaaatattattgaaatattctcaaaaatc |
114 |
Q |
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| T |
14830902 |
ctaaaatggtatctttctcatctaaattttt-tgagaccaaattattattgttgatacatactttttgaccaaaatattattgaaatattctaaaaactc |
14831000 |
T |
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| Q |
115 |
ataattttgacttaatataactttttataataaccatgacgctaacct |
162 |
Q |
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| T |
14831001 |
acaattttgacttaatgtcactttttatagtaaccatgatactaacct |
14831048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 14831072 - 14831116
Alignment:
| Q |
189 |
tatattcccattgcttataaggctattaaagcctccccaagctca |
233 |
Q |
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| T |
14831072 |
tatattcccattgcttataaggctattaaagcctccccaagctca |
14831116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 13435818 - 13435680
Alignment:
| Q |
15 |
ctaaaatggcataattctcatctatatttttatt--agaccaaataattattattgatatatactttttgaccaaaatattattgaaatattctcaaaaa |
112 |
Q |
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||||||||| || |||||||||| |||||| | ||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
13435818 |
ctaaaatggtatctttctcatctaaatttttctctgagaccaaattattattgttgatacatactttttgaccaaaatattattgaaatattctaaaaac |
13435719 |
T |
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| Q |
113 |
tcataattttgacttaatataactttttataataaccat |
151 |
Q |
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| T |
13435718 |
tcacaattttgacttaatgtcactttttataataaccat |
13435680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 13435642 - 13435599
Alignment:
| Q |
190 |
atattcccattgcttataaggctattaaagcctccccaagctca |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13435642 |
atattcccattgcttataaggctattaaagcctccccaagctca |
13435599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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