View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7520_high_10 (Length: 240)
Name: NF7520_high_10
Description: NF7520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7520_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8142911 - 8142689
Alignment:
| Q |
1 |
tcaccattctcataggataccacaaaccctccttttccttttcgacacacannnnnnnnnnnnnnnnnntccttcactgttctttctgatcctacatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8142911 |
tcaccattctcataggataccacaaaccctccttttccttttcgacacacactctctctctttctctcttccttcactgttctttctgatcctacatttg |
8142812 |
T |
|
| Q |
101 |
actctgccatcaaaaaacagtgcttaagaaattatggaaactacctcagtttccaaatttctgtttctttttgtttcccttacattgttcttagttgttt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
8142811 |
actctgccatcaaaaaacagtgcttaagaaattatggaaactacctcagtttccaaatttctgtttctttttgtttcccttacattgttcttggctgttt |
8142712 |
T |
|
| Q |
201 |
actctgatgttacatatgacaga |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
8142711 |
actctgatgttacatatgacaga |
8142689 |
T |
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