View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7520_high_11 (Length: 231)
Name: NF7520_high_11
Description: NF7520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7520_high_11 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 18153037 - 18153238
Alignment:
| Q |
18 |
attttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgc |
117 |
Q |
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| T |
18153037 |
attttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgc |
18153136 |
T |
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| Q |
118 |
tctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttc |
217 |
Q |
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| T |
18153137 |
tctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttc |
18153236 |
T |
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| Q |
218 |
at |
219 |
Q |
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|| |
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| T |
18153237 |
at |
18153238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 222672 - 222478
Alignment:
| Q |
17 |
aattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccg |
116 |
Q |
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|||||| ||||||||||||||||||||||| || ||||| | ||| ||||||| |||||| || ||||| | | |||||||||||||||||||||| | |
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| T |
222672 |
aattttctcatcaacttgatgaattaattttaagatataggacttccctattagaacaggttgctcaaaggggtcgcctgttcttccatcaaatattctg |
222573 |
T |
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| Q |
117 |
ctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctc |
211 |
Q |
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| T |
222572 |
ctttttcccgggtactcgggttcaaatacccatggattttttgtttctttactggcttcatataattctgaaaacacaagttttcttgaagcctc |
222478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 47586066 - 47586031
Alignment:
| Q |
69 |
ataacaggctgttcaaaaagattccctgttcttcca |
104 |
Q |
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| T |
47586066 |
ataacaggctgttcaaaaagattccctgttcttcca |
47586031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 22998200 - 22998273
Alignment:
| Q |
99 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
172 |
Q |
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| T |
22998200 |
cttccataaaatatttcgctttttcccggatacttaggctgaaatattcatggattggatgtttctttattggc |
22998273 |
T |
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