View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7520_low_1 (Length: 954)
Name: NF7520_low_1
Description: NF7520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7520_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 438 - 939
Target Start/End: Original strand, 4583616 - 4584117
Alignment:
| Q |
438 |
taactaaattgatcatattacaactgaaagaaaccatattttctctttttagattgataagcataaagactaatgaaaacattgaagtagaaatcccaag |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4583616 |
taactaaattgatcatattacaactgaaagaaaccatattttctctttttagattgataagcataaagactaatgaaaacattgaagtagaagtcccaag |
4583715 |
T |
|
| Q |
538 |
attcgctggtttcggtgatatgttcttgaccaaatggatgttgttctacatacgtcttcatattttcagcagtcgccagtccatccagatattgtcgtaa |
637 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4583716 |
attcgctggtttcagtgatatgttcttgaccaaatggatgttgttctacatacgtcttcatattttcagcagttgccagtccatccagatattgtcgtaa |
4583815 |
T |
|
| Q |
638 |
atcgccatcagcagctgaccaaaaaacattttttgttattaataatgcatagcatgagataaacagctgatggatatgtcataagctttcacaaacgtct |
737 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4583816 |
atcgccatcagcggctgaccaaaaaacattttttgttattaataatgcatagcatgagataaacagctgatggatatgtcataagctttcacaaacgtct |
4583915 |
T |
|
| Q |
738 |
cacaagtgtttgtgtgactagataagctgatataaacaaatataaacagacccttagtataccatgtcgatgttactatttgttcaccttcatttatttt |
837 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4583916 |
cacaagtgtttgtgtgactagataagctgatataaacaaatataaacagacccttagtataccatgtcgatgttactatttgttcgccttcatttatttt |
4584015 |
T |
|
| Q |
838 |
tagaagatgtgagattatagccaaattttaaaagagcaattgagaagggacaataatcaagcaaaaccttcggagtttacaaatatacgtagatcatttt |
937 |
Q |
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| T |
4584016 |
aagaagatgtgagattatagccaaattttaaaagagcaattgagaagggacaataatcaagcaaaaccttcggagtttacaaatatacgtagatcatttt |
4584115 |
T |
|
| Q |
938 |
gt |
939 |
Q |
| |
|
|| |
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|
| T |
4584116 |
gt |
4584117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 211 - 396
Target Start/End: Original strand, 4583331 - 4583516
Alignment:
| Q |
211 |
ctcatttcttctttaaggaaacttctattggcgatcttaagttgcattaacatcatatataggtagcagcttaatgtaagattatataaatatgtaagat |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4583331 |
ctcatttcttcgttaaggaaacttctattggcgatcttaagttgcattaacatcatatataggtagcagcttaatgtaagattatataaatatgtaagat |
4583430 |
T |
|
| Q |
311 |
taacatctcaaaacaaatctttcaaattcatttatcaaactttctgcaaaatttcaactaacaagatttcttttcaatattcttca |
396 |
Q |
| |
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| T |
4583431 |
taacatctcaaaacaaatgtttcaaattcatttatcaaactttctgcaaaatttcaactaacaagatttcttttcaatattcttca |
4583516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 428 - 692
Target Start/End: Original strand, 4591130 - 4591392
Alignment:
| Q |
428 |
catagcagactaactaaattgatcatattacaactgaaagaaaccatattttctctttttagattgataagcataaagactaatgaaaacattgaagtag |
527 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||| || || |||||||| ||| |||||||| |||| |
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| T |
4591130 |
catagcagactaactaaattgatcatattacaactgaaagaaaccatgtttttacttttcaggttgacaaacagaaagactattgataacattgaggtag |
4591229 |
T |
|
| Q |
528 |
aaatcccaagattcgctggtttcggtgatatgttcttgaccaaatggatgttgttctacatacgtcttcatattttcagcagtcgccagtccatccagat |
627 |
Q |
| |
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|| ||||||||||| | ||||| | |||| |||||||||||||||||||||||||||||||| || ||||||||||||| | ||||||||||| |||| |
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| T |
4591230 |
aagtcccaagattcatttgtttcagcgatacgttcttgaccaaatggatgttgttctacatacttcgacatattttcagcatttgccagtccatcaagat |
4591329 |
T |
|
| Q |
628 |
attgtcgtaaatcgccatcagcagctgaccaaaaaacattttttgttattaataatgcatagcat |
692 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||||| |
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|
| T |
4591330 |
attgtcgtaaatcgccatcagcagctga-cgaaaaacattttatgttatt-ataatgcatagcat |
4591392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 430 - 663
Target Start/End: Original strand, 4599815 - 4600047
Alignment:
| Q |
430 |
tagcagactaactaaattgatcatattacaactgaaagaaaccatattttctctttttagattgataagcataaagactaatgaaaacattgaagtagaa |
529 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||| || |||||||||| ||||| ||| |||| |||| ||| | |||||||| ||| ||||||| |||||| |
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| T |
4599815 |
tagcagaccaacaaaattgatcatattccaattgcaagaaaccat-ttttcacttcttaggttgacaagtagaaagactattgatcacattgaggtagaa |
4599913 |
T |
|
| Q |
530 |
atcccaagattcgctggtttcggtgatatgttcttgaccaaatggatgttgttctacatacgtcttcatattttcagcagtcgccagtccatccagatat |
629 |
Q |
| |
|
|||||||| ||| || |||| |||||| |||||||||||||||||||||||||||||||| || ||||||||||||| | |||| ||| |||| |||| |
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| T |
4599914 |
atcccaagcttcacttttttcagtgatacgttcttgaccaaatggatgttgttctacatacatcaacatattttcagcatttgccaatccttccacatat |
4600013 |
T |
|
| Q |
630 |
tgtcgtaaatcgccatcagcagctgaccaaaaaa |
663 |
Q |
| |
|
|||| | |||||| ||||||||||| |||||| |
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| T |
4600014 |
cgtcgaagatcgcctccagcagctgacaaaaaaa |
4600047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 103 - 396
Target Start/End: Original strand, 4590767 - 4591050
Alignment:
| Q |
103 |
taatgtaactatatgtgtcattggtttggcaatatcagacactaacacgtgtcaaacaccaaatacaccttcagtttgaagtgtcaatactaccaatatt |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||| ||||| | ||| |||| ||||||| ||||| |||||||||||| |||| |
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| T |
4590767 |
taatgtaactatatgtgtcacaagtttggcaatatcgaacactaaca--tgtcagataccgaataaaccttcaatttgatgtgtcaatacta--aatacg |
4590862 |
T |
|
| Q |
203 |
annnnnnnctcatttcttctttaaggaaacttctattggcgatcttaagttgcattaacatcatatataggtagcagcttaatgtaagattatata--aa |
300 |
Q |
| |
|
|||||||| | ||| ||||||| ||||| | ||||||||||||||||||| || || ||| |||||| |||||| ||||||||||| || |
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|
| T |
4590863 |
tcaaatttttcatttctccactaaagaaacttatattgacaatcttaagttgcattaacaccacatgtagatagcagtttaatgcaagattatatataaa |
4590962 |
T |
|
| Q |
301 |
tatgtaagattaacatctcaaaacaaatctttcaaattcatttatcaaactttctgcaaaatttcaactaacaagatttcttttcaatattcttca |
396 |
Q |
| |
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||||||| || || |||||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||| |||||||| |
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|
| T |
4590963 |
tatgtaa--------tcacacaacaaatctttcaaattcatttttcaaactatctgcaaaatttcaacaaaccagatttcttttcaaaattcttca |
4591050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 469 - 692
Target Start/End: Original strand, 4571863 - 4572085
Alignment:
| Q |
469 |
aaccatattttctctttttagattgataagcataaagactaatgaaaacattgaagtagaaatcccaagattcgctggtttcggtgatatgttcttgacc |
568 |
Q |
| |
|
|||||| | ||| ||||| || |||| ||||| ||| |||| ||| |||||||| ||| ||||||||| |||| | ||||| ||||| |||||||||| |
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|
| T |
4571863 |
aaccatgtcttcacttttcaggttgacaagcagaaatactattgataacattgaggtaaaaatcccaaaattcatttgtttcagtgatccgttcttgacc |
4571962 |
T |
|
| Q |
569 |
aaatggatgttgttctacatacgtcttcatattttcagcagtcgccagtccatccagatattgtcgtaaatcgccatcagcagctgaccaaaaaacattt |
668 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||| | |||||||| || |||||||| |||| |||||| | |||||||| || ||| | || |
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| T |
4571963 |
aaatggatgttgttctacatacttcaccatattttcagcacttgccagtccttctagatattggcgtagatcgcctccggcagctga-cagaaagtaatt |
4572061 |
T |
|
| Q |
669 |
tttgttattaataatgcatagcat |
692 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4572062 |
cttgttattaataatgcatagcat |
4572085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 4582789 - 4582874
Alignment:
| Q |
110 |
actatatgtgtcattggtttggcaatatcagacactaacacgtgtcaaacaccaaatacaccttcagtttgaagtgtcaatactac |
195 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
4582789 |
actatatgtgtcactggtttgacaatatcagacgttaacacatgtcaaacaccaaatatgccttcagtttgaagtgtcaatactac |
4582874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 866 - 939
Target Start/End: Original strand, 4591779 - 4591852
Alignment:
| Q |
866 |
taaaagagcaattgagaagggacaataatcaagcaaaaccttcggagtttacaaatatacgtagatcattttgt |
939 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
4591779 |
taaaagagaaattgagaagggacaataatcaagcaaaaccttatgagtttacaaatatatgtagatcattttgt |
4591852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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