View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7520_low_10 (Length: 249)
Name: NF7520_low_10
Description: NF7520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7520_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 6072973 - 6073191
Alignment:
| Q |
14 |
atatttactgtgtatcaggaaagctcattcattagtgttttgttttcgtacatcctaagttaggaaacaggaccacaaattaatttgtagagtctcctta |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6072973 |
atatttactatgtatcaggaaagctcattcattagtgttttgttttcgtacatcctaagttaggaaacaggaccacaaattaatttgtagagtctcctta |
6073072 |
T |
|
| Q |
114 |
attaagaatgcaatacctacatatggaattatggcttcagccttcaagacccaccctatgttcctctttataatacaaactgtacaaattaagataggct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6073073 |
attaagaatgcaatacctacatatggaattatggcttcagccttcaagacccaccctatgttcctctttataatacaaactgtacaaattaagataggct |
6073172 |
T |
|
| Q |
214 |
gtatatgaatgcgtttaat |
232 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6073173 |
gtatatgaatgcgtttaat |
6073191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 40722639 - 40722684
Alignment:
| Q |
187 |
tacaaactgtacaaattaagataggctgtatatgaatgcgtttaat |
232 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
40722639 |
tacaaactatacaaatgaagataggttgtatatgcatgcgtttaat |
40722684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University