View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7520_low_2 (Length: 860)

Name: NF7520_low_2
Description: NF7520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7520_low_2
NF7520_low_2
[»] chr6 (13 HSPs)
chr6 (399-845)||(2216574-2217018)
chr6 (20-292)||(2217126-2217396)
chr6 (493-607)||(24798855-24798968)
chr6 (497-619)||(11643754-11643875)
chr6 (493-619)||(18494735-18494858)
chr6 (487-619)||(18494953-18495084)
chr6 (511-619)||(24798643-24798751)
chr6 (493-605)||(11643984-11644094)
chr6 (494-579)||(24690607-24690691)
chr6 (493-585)||(24690356-24690447)
chr6 (509-619)||(9955590-9955700)
chr6 (506-619)||(9954820-9954933)
chr6 (559-605)||(11643898-11643944)
[»] scaffold0781 (2 HSPs)
scaffold0781 (399-845)||(5031-5474)
scaffold0781 (20-292)||(5582-5852)
[»] scaffold0060 (1 HSPs)
scaffold0060 (493-619)||(22926-23051)
[»] chr4 (11 HSPs)
chr4 (493-605)||(50509363-50509474)
chr4 (493-607)||(39161289-39161402)
chr4 (493-605)||(55173488-55173599)
chr4 (493-619)||(47096801-47096924)
chr4 (514-619)||(39161508-39161613)
chr4 (495-605)||(37996068-37996177)
chr4 (514-607)||(55173355-55173449)
chr4 (493-619)||(47097021-47097143)
chr4 (509-566)||(9738134-9738191)
chr4 (509-566)||(9738956-9739013)
chr4 (493-542)||(2623449-2623497)
[»] chr1 (13 HSPs)
chr1 (494-605)||(37189583-37189693)
chr1 (493-619)||(19056151-19056276)
chr1 (493-619)||(22683142-22683267)
chr1 (493-607)||(10824602-10824715)
chr1 (493-605)||(19056386-19056497)
chr1 (493-607)||(15825754-15825865)
chr1 (494-605)||(18844461-18844571)
chr1 (493-618)||(37189369-37189492)
chr1 (493-604)||(18844684-18844795)
chr1 (511-619)||(10824386-10824494)
chr1 (536-607)||(22683374-22683445)
chr1 (559-607)||(10824519-10824567)
chr1 (559-607)||(22683290-22683338)
[»] chr2 (18 HSPs)
chr2 (493-619)||(2916379-2916504)
chr2 (493-619)||(16973065-16973190)
chr2 (511-619)||(40987675-40987783)
chr2 (514-619)||(2916598-2916703)
chr2 (493-605)||(16973299-16973410)
chr2 (493-604)||(44594249-44594360)
chr2 (494-605)||(44594473-44594583)
chr2 (493-605)||(11533679-11533791)
chr2 (510-605)||(38982792-38982887)
chr2 (493-607)||(38982558-38982671)
chr2 (493-619)||(13559523-13559647)
chr2 (518-619)||(24126150-24126245)
chr2 (518-585)||(24125908-24125975)
chr2 (511-560)||(24125688-24125737)
chr2 (498-619)||(40987867-40987987)
chr2 (559-607)||(16973213-16973261)
chr2 (541-619)||(13559352-13559430)
chr2 (509-566)||(34826709-34826766)
[»] chr8 (14 HSPs)
chr8 (493-605)||(13884490-13884601)
chr8 (493-619)||(11867903-11868027)
chr8 (493-619)||(13884709-13884834)
chr8 (501-619)||(2554071-2554188)
chr8 (493-619)||(29714543-29714668)
chr8 (493-619)||(29714763-29714888)
chr8 (493-619)||(42126605-42126730)
chr8 (493-607)||(42126383-42126496)
chr8 (539-619)||(14996680-14996761)
chr8 (515-585)||(43416285-43416355)
chr8 (509-619)||(26745279-26745389)
chr8 (509-566)||(26746012-26746069)
chr8 (559-605)||(14996608-14996654)
chr8 (562-607)||(2554002-2554047)
[»] chr7 (15 HSPs)
chr7 (511-605)||(30862236-30862330)
chr7 (493-619)||(6474502-6474626)
chr7 (511-619)||(47373683-47373791)
chr7 (493-619)||(28715863-28715988)
chr7 (493-607)||(41985911-41986024)
chr7 (492-619)||(6474280-6474407)
chr7 (495-607)||(28715645-28715756)
chr7 (493-619)||(47373463-47373590)
chr7 (511-619)||(30862441-30862549)
chr7 (493-565)||(41986183-41986254)
chr7 (509-619)||(38408121-38408231)
chr7 (493-547)||(22226665-22226718)
chr7 (509-619)||(38407448-38407558)
chr7 (509-619)||(6271188-6271298)
chr7 (509-566)||(6270235-6270292)
[»] chr3 (12 HSPs)
chr3 (493-619)||(40244626-40244752)
chr3 (493-619)||(51663471-51663596)
chr3 (494-607)||(46003481-46003593)
chr3 (495-619)||(46003251-46003374)
chr3 (495-604)||(40364194-40364301)
chr3 (493-605)||(51663251-51663362)
chr3 (511-607)||(20537944-20538040)
chr3 (512-619)||(40364060-40364167)
chr3 (493-619)||(20538155-20538280)
chr3 (493-555)||(40244873-40244934)
chr3 (559-605)||(20538076-20538122)
chr3 (559-607)||(46003398-46003446)
[»] chr5 (3 HSPs)
chr5 (493-619)||(21249363-21249488)
chr5 (494-544)||(21249629-21249678)
chr5 (559-607)||(21249511-21249559)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 399 - 845
Target Start/End: Complemental strand, 2217018 - 2216574
Alignment:
Q  399 attcttttacaaataattttatagtatattacaatttgggtatgagaagtgtggctagaagtatctttcgctatgtgttgtctttttatattttgcttat 498  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  2217018 attcttttacaaataattttatagtatattacaattttggtatgagaagtgtggctagaagtgtcttttgctatgtgttgtctttttatatttggcttat 2216919  T
Q  499 tcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagt 598  Q
    ||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  2216918 tcaatcatccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttattagt 2216820  T
Q  599 tttagtcctatatgttagtttatttgtagtaattttcagttcatcataaagcttggaataatgnnnnnnncaataggcttggaatggtgtatgattttat 698  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  2216819 tttagtcatttatgttagtttatttgtagtaattttcagttcatcataaagcttggaataatgcttttttcaataggcttggaatggtgtatgattttat 2216720  T
Q  699 aatacttgaaaacgattaaagtatttttaatatagtaaaatgggagatataattaaaaatttaaatgtgattttttggttctcgcattagctaaaatggg 798  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2216719 aatacttgaaaacgattaaagtatttttaatatagtaaaatgggagatctaattaaaaatttaaatgtgattttttggttctcgcattagctaaaa-ggg 2216621  T
Q  799 acaaagtatgaaatattagagaaatgtcttataaacatgttttcata 845  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  2216620 acaaagtatgaaatattagagaaacgacttataaacatgttttcata 2216574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 2217396 - 2217126
Alignment:
Q  20 ccattaactaccttgagaatcatgtcatgatacctaaagagaacaannnnnnnatcggttagatcattggaggtgagatattatggtggtatatatatat 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||      
T  2217396 ccattaactacctcgagaatcatgtcatgatacctaaagagaacaatttttttatcggttagatcattggaggtgagatattatggtggtatatatat-- 2217299  T
Q  120 ccacttcaccacgagggttatagtgcacgttagtttcgtgctatttgaaaaataaaatgtt-gacaaaataaaatcatgaaatcaatgatatagacgttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||    
T  2217298 ccacttcaccacgagggttatagtgcacgttagtttcgtgctatttgaaaaataaaatgttcgacaaagtaaaatcatgaaatcaatgatatagac-ttg 2217200  T
Q  219 aaattttgagtggtgagggcaacatatatattatttaatattattacaaggacatgctcatacatgcacacatt 292  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  2217199 aaattttgagtggtgagggcaacatatatattatttcatattattacaagcacatgctcatacatacacacatt 2217126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 493 - 607
Target Start/End: Complemental strand, 24798968 - 24798855
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| || |||    
T  24798968 gcttattcaatcacccga-tcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttcgtt 24798870  T
Q  593 actagttttagtcct 607  Q
    |||||||||||||||    
T  24798869 actagttttagtcct 24798855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 497 - 619
Target Start/End: Original strand, 11643754 - 11643875
Alignment:
Q  497 attcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttacta 596  Q
    ||||||||||| | ||||||||| |||||||||||||| |||||| |||||||||||||||||||| ||||||| | |||||||||||| ||||||||||    
T  11643754 attcaatcacccg-gtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttacta 11643852  T
Q  597 gttttagtcctatatgttagttt 619  Q
    ||||||||||| | |||||||||    
T  11643853 gttttagtcctctctgttagttt 11643875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 18494735 - 18494858
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    |||||||||||||| || |||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||| |||| ||||||||| |||| ||||||    
T  18494735 gcttattcaatcacatg-gtcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttgtt 18494831  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||||| | |||||||||    
T  18494832 actagttttagtcctttttgttagttt 18494858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 487 - 619
Target Start/End: Complemental strand, 18495084 - 18494953
Alignment:
Q  487 tattttgcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttga 586  Q
    ||||| ||||||||||||| || ||||||||||||||||||||| | |||||||| |||| ||||||||||||||| ||||||| |||||||| ||||||    
T  18495084 tatttggcttattcaatcatct-agtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttga 18494986  T
Q  587 tttgttactagttttagtcctatatgttagttt 619  Q
    |  |||| |||||||||| || | |||||||||    
T  18494985 tccgttattagttttagttctttctgttagttt 18494953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 511 - 619
Target Start/End: Original strand, 24798643 - 24798751
Alignment:
Q  511 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctata 610  Q
    ||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||| ||| |||||||||| || |||||||||||||||| | |     
T  24798643 gtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcatttc 24798742  T
Q  611 tgttagttt 619  Q
    |||||||||    
T  24798743 tgttagttt 24798751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 493 - 605
Target Start/End: Complemental strand, 11644094 - 11643984
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggt-cccctaactataatttgtaccaatttgatcccctatgttttgatttgt 591  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| | |||||||||||  |||||    
T  11644094 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ctttgt 11643998  T
Q  592 tactagttttagtc 605  Q
    ||||||||||||||    
T  11643997 tactagttttagtc 11643984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 494 - 579
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  494 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctat 579  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||    
T  24690691 cttattcaatcacccga-tcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 493 - 585
Target Start/End: Original strand, 24690356 - 24690447
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttg 585  Q
    ||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  24690356 gcttattcaatcacccg-gtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttg 24690447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 509 - 619
Target Start/End: Complemental strand, 9955700 - 9955590
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtccta 608  Q
    ||||||||||||||||||| |||| | || |||||||||||| ||||||||||||||| || |||| ||| |||||| | |||||| |||||  |||||     
T  9955700 gagtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctt 9955601  T
Q  609 tatgttagttt 619  Q
    | |||||||||    
T  9955600 tctgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 619
Target Start/End: Original strand, 9954820 - 9954933
Alignment:
Q  506 cctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 605  Q
    |||||||||||||||||||||| ||||   || |||||||||||| ||||||||||||||| ||  ||| ||| |||||| |  ||||| |||||  |||    
T  9954820 cctgagtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagtttcggtc 9954919  T
Q  606 ctatatgttagttt 619  Q
    || |||||||||||    
T  9954920 ctttatgttagttt 9954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 11643898 - 11643944
Alignment:
Q  559 tgtaccaatttgatcccctatgttttgatttgttactagttttagtc 605  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtc 11643944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 399 - 845
Target Start/End: Complemental strand, 5474 - 5031
Alignment:
Q  399 attcttttacaaataattttatagtatattacaatttgggtatgagaagtgtggctagaagtatctttcgctatgtgttgtctttttatattttgcttat 498  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  5474 attcttttacaa-taattttatagtatattacaattttggtatgagaagtgtggctagaagtgtcttttgctatgtgttgtctttttatatttggcttat 5376  T
Q  499 tcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagt 598  Q
    ||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  5375 tcaatcatccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttattagt 5277  T
Q  599 tttagtcctatatgttagtttatttgtagtaattttcagttcatcataaagcttggaataatgnnnnnnncaataggcttggaatggtgtatgattttat 698  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  5276 tttagtcatttatgttagtttatttgtagtaattttcagttcatcataaagcttggaataatgcttttttcaataggcttggaatggtgtatgattttat 5177  T
Q  699 aatacttgaaaacgattaaagtatttttaatatagtaaaatgggagatataattaaaaatttaaatgtgattttttggttctcgcattagctaaaatggg 798  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5176 aatacttgaaaacgattaaagtatttttaatatagtaaaatgggagatctaattaaaaatttaaatgtgattttttggttctcgcattagctaaaa-ggg 5078  T
Q  799 acaaagtatgaaatattagagaaatgtcttataaacatgttttcata 845  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  5077 acaaagtatgaaatattagagaaacgacttataaacatgttttcata 5031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 5852 - 5582
Alignment:
Q  20 ccattaactaccttgagaatcatgtcatgatacctaaagagaacaannnnnnnatcggttagatcattggaggtgagatattatggtggtatatatatat 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||      
T  5852 ccattaactacctcgagaatcatgtcatgatacctaaagagaacaatttttttatcggttagatcattggaggtgagatattatggtggtatatatat-- 5755  T
Q  120 ccacttcaccacgagggttatagtgcacgttagtttcgtgctatttgaaaaataaaatgtt-gacaaaataaaatcatgaaatcaatgatatagacgttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||    
T  5754 ccacttcaccacgagggttatagtgcacgttagtttcgtgctatttgaaaaataaaatgttcgacaaagtaaaatcatgaaatcaatgatatagac-ttg 5656  T
Q  219 aaattttgagtggtgagggcaacatatatattatttaatattattacaaggacatgctcatacatgcacacatt 292  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  5655 aaattttgagtggtgagggcaacatatatattatttcatattattacaagcacatgctcatacatacacacatt 5582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 23051 - 22926
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |  |||    
T  23051 gcttattcaatcacccg-gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgtt 22953  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||||| | |||||||||    
T  22952 actagttttagtcctttctgttagttt 22926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 493 - 605
Target Start/End: Complemental strand, 50509474 - 50509363
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  50509474 gcttattcaatcatctga-tcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 50509376  T
Q  593 actagttttagtc 605  Q
    |||| ||||||||    
T  50509375 actaattttagtc 50509363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 493 - 607
Target Start/End: Original strand, 39161289 - 39161402
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||    
T  39161289 gcttattcaatcacccga-tcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 39161387  T
Q  593 actagttttagtcct 607  Q
    |||||||||||||||    
T  39161388 actagttttagtcct 39161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 493 - 605
Target Start/End: Complemental strand, 55173599 - 55173488
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  55173599 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgctttgtt 55173501  T
Q  593 actagttttagtc 605  Q
    ||| |||||||||    
T  55173500 acttgttttagtc 55173488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 47096801 - 47096924
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||  ||||||||||||| || |||    
T  47096801 gcttattcaatcacctga-tcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaatttg-ccccctatgttttgcttcgtt 47096897  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||| ||||||||||| |||||| ||||    
T  47096898 acttgttttagtcctttatgtttgttt 47096924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 514 - 619
Target Start/End: Complemental strand, 39161613 - 39161508
Alignment:
Q  514 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgt 613  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||| |  |||| ||||||||||||| | |||    
T  39161613 ccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgttattagttttagtcctttctgt 39161514  T
Q  614 tagttt 619  Q
    ||||||    
T  39161513 tagttt 39161508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 495 - 605
Target Start/End: Original strand, 37996068 - 37996177
Alignment:
Q  495 ttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttac 594  Q
    |||||||||||||||| |||||||| | || ||||||| | ||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||     
T  37996068 ttattcaatcacctga-tcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttat 37996166  T
Q  595 tagttttagtc 605  Q
    |||||||||||    
T  37996167 tagttttagtc 37996177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 514 - 607
Target Start/End: Original strand, 55173355 - 55173449
Alignment:
Q  514 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgat-cccctatgttttgatttgttactagttttagtcct 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||| ||||| |  ||||||||||||||||||    
T  55173355 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgttactagttttagtcct 55173449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 47097143 - 47097021
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||| | || || |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||   ||||||||||    |||    
T  47097143 gcttattcaatcatccga-tctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccgtt 47097048  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||| | | |||||||||    
T  47097047 actagttttagtcatttttgttagttt 47097021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 566
Target Start/End: Original strand, 9738134 - 9738191
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaa 566  Q
    ||||||||||||||||||| ||||   || |||||||||||| |||||||||||||||    
T  9738134 gagtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaa 9738191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 566
Target Start/End: Complemental strand, 9739013 - 9738956
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaa 566  Q
    |||||||||||||| |||| |||| | || |||||||||||| |||||||||||||||    
T  9739013 gagtcccttaacttgattgtttgtatcaaattggtcccctaaatataatttgtaccaa 9738956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 2623497 - 2623449
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttgg 542  Q
    ||||||||||||||  | |||||||||||||||||||||||| |||||||    
T  2623497 gcttattcaatcactcg-gtcccttaacttaattgattgtctcaatttgg 2623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 494 - 605
Target Start/End: Complemental strand, 37189693 - 37189583
Alignment:
Q  494 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtta 593  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||    
T  37189693 cttattcaatcacctg-gtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgtta 37189595  T
Q  594 ctagttttagtc 605  Q
    ||||||||||||    
T  37189594 ctagttttagtc 37189583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 19056151 - 19056276
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||| ||||| ||||||    
T  19056151 gcttattcaatcacctga-tcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||| | | |||||||||    
T  19056250 actagttttagtcttttctgttagttt 19056276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 22683142 - 22683267
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| |  ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  22683142 gcttattcaatcacccgc-tcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 22683240  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||||| | |||||||||    
T  22683241 actagttttagtcctttctgttagttt 22683267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 493 - 607
Target Start/End: Complemental strand, 10824715 - 10824602
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| || |||    
T  10824715 gcttattcaatcatccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgtt 10824617  T
Q  593 actagttttagtcct 607  Q
    |||||||||||||||    
T  10824616 actagttttagtcct 10824602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 493 - 605
Target Start/End: Complemental strand, 19056497 - 19056386
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |  ||||||||||| ||||||    
T  19056497 gcttattcaatcatccg-gtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgtt 19056399  T
Q  593 actagttttagtc 605  Q
    |||||||||||||    
T  19056398 actagttttagtc 19056386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 493 - 607
Target Start/End: Complemental strand, 15825865 - 15825754
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | ||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||||    
T  15825865 gcttattcaatcacccg-gtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgtt 15825769  T
Q  593 actagttttagtcct 607  Q
    | |||||||||||||    
T  15825768 attagttttagtcct 15825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 494 - 605
Target Start/End: Original strand, 18844461 - 18844571
Alignment:
Q  494 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtta 593  Q
    ||||||||| ||| || |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| || ||||    
T  18844461 cttattcaaccacatg-gtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgtta 18844559  T
Q  594 ctagttttagtc 605  Q
    ||||||||||||    
T  18844560 ctagttttagtc 18844571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 493 - 618
Target Start/End: Original strand, 37189369 - 37189492
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||| |||||||||| |  |||    
T  37189369 gcttattcaatcacccg-gtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  593 actagttttagtcctatatgttagtt 618  Q
    ||||||||||||||| | ||||||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 493 - 604
Target Start/End: Complemental strand, 18844795 - 18844684
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtc-ccctaactataatttgtaccaatttgatcccctatgttttgatttgt 591  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||||| ||| |||||||||| |  ||    
T  18844795 gcttattcaatcacccga-tcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgt 18844697  T
Q  592 tactagttttagt 604  Q
    |||||||||||||    
T  18844696 tactagttttagt 18844684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 511 - 619
Target Start/End: Original strand, 10824386 - 10824494
Alignment:
Q  511 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctata 610  Q
    |||| ||||||||||||||| |   ||||||||||||||| ||||||||||| ||||||| ||| |||||||||| |  |||||||||||||||||| |     
T  10824386 gtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcctttc 10824485  T
Q  611 tgttagttt 619  Q
    |||||||||    
T  10824486 tgttagttt 10824494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 536 - 607
Target Start/End: Complemental strand, 22683445 - 22683374
Alignment:
Q  536 aatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 607  Q
    ||||||||||||||||| | ||||||||||||||| ||| |||||||||| |  ||||||||||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcct 22683374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 10824567 - 10824519
Alignment:
Q  559 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 607  Q
    ||||||||||||||||||||||||||| |  ||| ||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcct 10824519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 22683290 - 22683338
Alignment:
Q  559 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 607  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcct 22683338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 7e-39; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 2916379 - 2916504
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| || || |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  2916379 gcttattcaatcacccga-tctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2916477  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    |||||||||| |||| | |||||||||    
T  2916478 actagttttaatcctttctgttagttt 2916504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 16973065 - 16973190
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||    
T  16973065 gcttattcaatcacccg-gtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    |||||||||| | || | |||||||||    
T  16973164 actagttttaattctttctgttagttt 16973190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 511 - 619
Target Start/End: Original strand, 40987675 - 40987783
Alignment:
Q  511 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctata 610  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||| | ||    
T  40987675 gtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgttactagttttagtctttta 40987774  T
Q  611 tgttagttt 619  Q
    |||||||||    
T  40987775 tgttagttt 40987783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 514 - 619
Target Start/End: Complemental strand, 2916703 - 2916598
Alignment:
Q  514 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgt 613  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||| ||||| | ||||||||||||| ||||| | |||    
T  2916703 ccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgt 2916604  T
Q  614 tagttt 619  Q
    ||||||    
T  2916603 tagttt 2916598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 493 - 605
Target Start/End: Complemental strand, 16973410 - 16973299
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    |||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||| ||| |||||||||| |   ||    
T  16973410 gcttattcaatcacatg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccatt 16973312  T
Q  593 actagttttagtc 605  Q
    |||||||||||||    
T  16973311 actagttttagtc 16973299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 493 - 604
Target Start/End: Original strand, 44594249 - 44594360
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtc-ccctaactataatttgtaccaatttgatcccctatgttttgatttgt 591  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||||| ||| |||||||||| | |||    
T  44594249 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgt 44594347  T
Q  592 tactagttttagt 604  Q
    |||||||||||||    
T  44594348 tactagttttagt 44594360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 494 - 605
Target Start/End: Complemental strand, 44594583 - 44594473
Alignment:
Q  494 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtta 593  Q
    |||||||||||||| | |||| |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  ||||||||| || ||||    
T  44594583 cttattcaatcacccg-gtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgtta 44594485  T
Q  594 ctagttttagtc 605  Q
    ||||||||||||    
T  44594484 ctagttttagtc 44594473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 493 - 605
Target Start/End: Complemental strand, 11533791 - 11533679
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgat-cccctatgttttgatttgt 591  Q
    ||||||||||||| | | ||| |||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| | ||||||||||||| ||| |    
T  11533791 gcttattcaatcatcag-gtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgctttat 11533693  T
Q  592 tactagttttagtc 605  Q
    ||||||||||||||    
T  11533692 tactagttttagtc 11533679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 510 - 605
Target Start/End: Complemental strand, 38982887 - 38982792
Alignment:
Q  510 agtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 605  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | || ||||||||| ||  |||||||||||||||    
T  38982887 agtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtc 38982792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 493 - 607
Target Start/End: Original strand, 38982558 - 38982671
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||| ||||||||| || ||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||||| ||   ||||||||| || |||    
T  38982558 gcttaatcaatcacccga-tcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgtt 38982656  T
Q  593 actagttttagtcct 607  Q
     ||||||||||||||    
T  38982657 gctagttttagtcct 38982671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 13559647 - 13559523
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||| | | |||||||||||||||||||||| | |||||||| |||||||||||||||||| ||| ||| |||| | || |||| | ||||    
T  13559647 gcttattcaatcatccg-gtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctgtt 13559550  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||| ||||||| | |||||||||||    
T  13559549 actagatttagtcatttatgttagttt 13559523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 518 - 619
Target Start/End: Complemental strand, 24126245 - 24126150
Alignment:
Q  518 aacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagt 617  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||| |      |||||||||||||| |||||||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 518 - 585
Target Start/End: Complemental strand, 24125975 - 24125908
Alignment:
Q  518 aacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttg 585  Q
    ||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttg 24125908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 24125688 - 24125737
Alignment:
Q  511 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttg 560  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  24125688 gtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 498 - 619
Target Start/End: Complemental strand, 40987987 - 40987867
Alignment:
Q  498 ttcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactag 597  Q
    |||||||||| | ||| |||||||||||| ||||||| |||||| ||| ||||||||||||||||  |||||| |||||||| ||||| | | || |||     
T  40987987 ttcaatcacccg-gtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaa 40987889  T
Q  598 ttttagtcctatatgttagttt 619  Q
    |||||||| | | |||||||||    
T  40987888 ttttagtcatttctgttagttt 40987867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 16973213 - 16973261
Alignment:
Q  559 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 607  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcct 16973261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 619
Target Start/End: Original strand, 13559352 - 13559430
Alignment:
Q  541 ggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 619  Q
    |||| ||||||||||||||||  ||||||| || | ||| ||||| ||||||| ||||||||||| | | |||||||||    
T  13559352 ggtctcctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagttt 13559430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 566
Target Start/End: Complemental strand, 34826766 - 34826709
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaa 566  Q
    ||||||||||||||||||| |||| | || |||||||| ||| | |||||||||||||    
T  34826766 gagtcccttaacttaattgtttgtatcaaattggtcccgtaaatttaatttgtaccaa 34826709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 493 - 605
Target Start/End: Original strand, 13884490 - 13884601
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| || |||    
T  13884490 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgtt 13884588  T
Q  593 actagttttagtc 605  Q
    |||||||||||||    
T  13884589 actagttttagtc 13884601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 11868027 - 11867903
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||||| |||| ||||||||||||||||||| |||||||| || ||||||||||||||| ||||||| ||| ||||||||||||||||     
T  11868027 gcttattcaatcacctg-gtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatttgtc 11867930  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||||| |||||||||||    
T  11867929 actagttttagtcctttatgttagttt 11867903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 13884834 - 13884709
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||| || |||    
T  13884834 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||| ||||||||||| | |||||||||    
T  13884735 actggttttagtcctttttgttagttt 13884709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 501 - 619
Target Start/End: Complemental strand, 2554188 - 2554071
Alignment:
Q  501 aatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttt 600  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| || ||||||||||| ||||||||| ||||    
T  2554188 aatcacct-agtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttt 2554090  T
Q  601 tagtcctatatgttagttt 619  Q
    |||| || | |||||||||    
T  2554089 tagttctttctgttagttt 2554071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 29714543 - 29714668
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||||    
T  29714543 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgtt 29714641  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||| |||| || | | |||||||||    
T  29714642 actagctttaatcatttctgttagttt 29714668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 29714888 - 29714763
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    |||||||  |||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||| |||||||||| ||  ||    
T  29714888 gcttatttgatcacctg-gtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||| | ||||| |||||    
T  29714789 actagttttagtcatttatgtcagttt 29714763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 42126730 - 42126605
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||| ||| |||||| | |||     
T  42126730 gcttattcaatcacccg-gtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    |||| |||||||| | | |||||||||    
T  42126631 actaattttagtcatttctgttagttt 42126605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 493 - 607
Target Start/End: Original strand, 42126383 - 42126496
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||||||||||||||| ||||||| |||||| | | |||||||||||||||| |||||||  ||||||||||||| || | |    
T  42126383 gcttattcaatcacccg-gtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttcgct 42126481  T
Q  593 actagttttagtcct 607  Q
    |||||||||||||||    
T  42126482 actagttttagtcct 42126496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 539 - 619
Target Start/End: Complemental strand, 14996761 - 14996680
Alignment:
Q  539 ttggtcccctaactataatttgtaccaatttgatcccc-tatgttttgatttgttactagttttagtcctatatgttagttt 619  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagttt 14996680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 515 - 585
Target Start/End: Original strand, 43416285 - 43416355
Alignment:
Q  515 cttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttg 585  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| |||||| ||| |||||||||||    
T  43416285 cttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttg 43416355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 509 - 619
Target Start/End: Original strand, 26745279 - 26745389
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtccta 608  Q
    ||||||||||||||||||| ||||  ||| |||||||||||| ||||||||||||||| ||  ||| ||| |||||| | |||||| |||||  |||||     
T  26745279 gagtcccttaacttaattgtttgtactaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctt 26745378  T
Q  609 tatgttagttt 619  Q
    | |||||||||    
T  26745379 tctgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 566
Target Start/End: Complemental strand, 26746069 - 26746012
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaa 566  Q
    ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||||||    
T  26746069 gagtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaa 26746012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 14996608 - 14996654
Alignment:
Q  559 tgtaccaatttgatcccctatgttttgatttgttactagttttagtc 605  Q
    ||||| |||||| |||||||||||||| || ||||||||||||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtc 14996654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 607
Target Start/End: Original strand, 2554002 - 2554047
Alignment:
Q  562 accaatttgatcccctatgttttgatttgttactagttttagtcct 607  Q
    ||||||||| |||||||||||||  || ||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcct 2554047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 511 - 605
Target Start/End: Original strand, 30862236 - 30862330
Alignment:
Q  511 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 605  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  30862236 gtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgctttgttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 6474626 - 6474502
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |||| |||| |||| | ||||    
T  6474626 gcttattcaatcacccga-tcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctctgtt 6474529  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||||| |||||||||||    
T  6474528 actagttttagtcctttatgttagttt 6474502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 511 - 619
Target Start/End: Complemental strand, 47373791 - 47373683
Alignment:
Q  511 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctata 610  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  || | ||||||||||| |||||||||||||| |||| ||    
T  47373791 gtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttta 47373692  T
Q  611 tgttagttt 619  Q
    |||||||||    
T  47373691 tgttagttt 47373683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 28715988 - 28715863
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |  ||     
T  28715988 gcttattcaattacccg-gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctcagtc 28715890  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||| | | |||||||||    
T  28715889 actagttttagtcatttctgttagttt 28715863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 493 - 607
Target Start/End: Original strand, 41985911 - 41986024
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||| |||||||||||||||||||  ||||||| |||| ||||||||| ||||||    
T  41985911 gcttattcaatcaccc-agtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgtt 41986009  T
Q  593 actagttttagtcct 607  Q
    |||| ||||||||||    
T  41986010 actaattttagtcct 41986024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 492 - 619
Target Start/End: Original strand, 6474280 - 6474407
Alignment:
Q  492 tgcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatg-ttttgatttg 590  Q
    |||||||||||| ||| || ||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||| ||||||||| ||||| ||||    
T  6474280 tgcttattcaattaccgga-tcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttg 6474378  T
Q  591 ttactagttttagtcctatatgttagttt 619  Q
    ||||||||||||||| | | |||||||||    
T  6474379 ttactagttttagtcttttctgttagttt 6474407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 495 - 607
Target Start/End: Original strand, 28715645 - 28715756
Alignment:
Q  495 ttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttac 594  Q
    ||||||||||||| | |||||||||||||||| ||||| ||||||||||  ||||||||||||||||| ||||||| |||||||||||||| || |||||    
T  28715645 ttattcaatcacccg-gtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 28715743  T
Q  595 tagttttagtcct 607  Q
    |||||||||||||    
T  28715744 tagttttagtcct 28715756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 47373463 - 47373590
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactata--atttgtaccaatttgatcccctatgttttgatttg 590  Q
    ||||||||||||||  || || |||||||||||||||||||| |||||| ||| |||| ||||  ||||||||||||||| |||||||||||||| | ||    
T  47373463 gcttattcaatcactcga-tctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  591 ttactagttttagtcctatatgttagttt 619  Q
    || |||||||||||| | |||||||||||    
T  47373562 ttgctagttttagtcatttatgttagttt 47373590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 511 - 619
Target Start/End: Complemental strand, 30862549 - 30862441
Alignment:
Q  511 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctata 610  Q
    ||||||||| | |||||||||| | ||||| || |||||||||||||||||| ||||||| |||| ||||||||| | |||||||| |||||||| | |     
T  30862549 gtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttactaattttagtcttttc 30862450  T
Q  611 tgttagttt 619  Q
    |||||||||    
T  30862449 tgttagttt 30862441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 41986254 - 41986183
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtacca 565  Q
    ||||||||||||||| | || |||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  41986254 gcttattcaatcacccg-gttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 509 - 619
Target Start/End: Complemental strand, 38408231 - 38408121
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtccta 608  Q
    ||||||||||||||||||| |||| | || |||||||||||| ||||||||||||||| ||  ||| ||| |||||| | |||||| |||||  |||||     
T  38408231 gagtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctt 38408132  T
Q  609 tatgttagttt 619  Q
    | |||||||||    
T  38408131 tctgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 493 - 547
Target Start/End: Complemental strand, 22226718 - 22226665
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccc 547  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  22226718 gcttattcaatcacctga-tcccttagcttaattgattgtctcaatttggtcccc 22226665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 509 - 619
Target Start/End: Original strand, 38407448 - 38407558
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtccta 608  Q
    ||||||||||||||||| | ||||   || |||||||||||| ||||||||||||||| ||  ||| ||| |||||| | |||||| |||||  |||||     
T  38407448 gagtcccttaacttaatggtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctt 38407547  T
Q  609 tatgttagttt 619  Q
    | |||||||||    
T  38407548 tctgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 509 - 619
Target Start/End: Complemental strand, 6271298 - 6271188
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtccta 608  Q
    ||||||||||||||||||| || |   || |||||||||||| ||||||||||||||| ||  |||  || |||||| |  |||||||||||  |||||     
T  6271298 gagtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctt 6271199  T
Q  609 tatgttagttt 619  Q
    | |||||||||    
T  6271198 tctgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 566
Target Start/End: Original strand, 6270235 - 6270292
Alignment:
Q  509 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaa 566  Q
    ||||||||||||||||||  ||||  ||| |||||| ||||| |||||||||||||||    
T  6270235 gagtcccttaacttaattatttgtactaaattggtcgcctaaatataatttgtaccaa 6270292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 40244626 - 40244752
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaattt-gatcccctatgttttgatttgt 591  Q
    ||||||||||||| | || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||| |||||    
T  40244626 gcttattcaatcatccga-tcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgt 40244724  T
Q  592 tactagttttagtcctatatgttagttt 619  Q
    |||||||||||||| | | |||||||||    
T  40244725 tactagttttagtcatttctgttagttt 40244752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 51663596 - 51663471
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||| | ||||    
T  51663596 gcttattcaatcatccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgtt 51663498  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||| | | |||||||||    
T  51663497 actagttttagtcatttctgttagttt 51663471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 494 - 607
Target Start/End: Complemental strand, 46003593 - 46003481
Alignment:
Q  494 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtta 593  Q
    |||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||  |||    
T  46003593 cttatttaatcatctg-gtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcatta 46003495  T
Q  594 ctagttttagtcct 607  Q
    ||||||||||||||    
T  46003494 ctagttttagtcct 46003481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 495 - 619
Target Start/End: Original strand, 46003251 - 46003374
Alignment:
Q  495 ttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttac 594  Q
    ||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||| || | ||||||    
T  46003251 ttattcaatcacccg-gtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttac 46003349  T
Q  595 tagttttagtcctatatgttagttt 619  Q
     |||||||||||| | |||||||||    
T  46003350 aagttttagtcctttttgttagttt 46003374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 495 - 604
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  495 ttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttac 594  Q
    |||||||||||| || |||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||| |  |||||    
T  40364301 ttattcaatcacttg-gtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttac 40364204  T
Q  595 tagttttagt 604  Q
    ||||||||||    
T  40364203 tagttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 493 - 605
Target Start/End: Original strand, 51663251 - 51663362
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||| ||||||| | ||| |||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||  |||||||||||||| || |||    
T  51663251 gcttatttaatcacccg-gtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgtt 51663349  T
Q  593 actagttttagtc 605  Q
    |||||||||||||    
T  51663350 actagttttagtc 51663362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 511 - 607
Target Start/End: Original strand, 20537944 - 20538040
Alignment:
Q  511 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 607  Q
    |||||||||||||||||||  | | |||||| ||||||||||||||||||| |||||||| |||||||||||||| ||  |||||||||||||||||    
T  20537944 gtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattactagttttagtcct 20538040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 512 - 619
Target Start/End: Original strand, 40364060 - 40364167
Alignment:
Q  512 tcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatat 611  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||| | ||||| |  |||| ||||||||||| | | |    
T  40364060 tcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgttattagttttagtcattttt 40364159  T
Q  612 gttagttt 619  Q
    ||||||||    
T  40364160 gttagttt 40364167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 493 - 619
Target Start/End: Complemental strand, 20538280 - 20538155
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||| | |||| |||| |||||||||||||| |||||| |||||||||||||||||||| ||||||  |   |||||||||| |  |||    
T  20538280 gcttattcaatcacccg-gtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtt 20538182  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    ||||||||||||| | | |||||||||    
T  20538181 actagttttagtcatttctgttagttt 20538155  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 493 - 555
Target Start/End: Complemental strand, 40244934 - 40244873
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactata 555  Q
    |||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||    
T  40244934 gcttattcaatcacccc-gtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  559 tgtaccaatttgatcccctatgttttgatttgttactagttttagtc 605  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 46003446 - 46003398
Alignment:
Q  559 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 607  Q
    |||||||||||| ||| |||||||||| || ||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcct 46003398  T

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Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 21249363 - 21249488
Alignment:
Q  493 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcccctatgttttgatttgtt 592  Q
    ||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||| ||||| ||||||||||||  |||||||||||||| || |||    
T  21249363 gcttattcaatcacctg-gtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgtt 21249461  T
Q  593 actagttttagtcctatatgttagttt 619  Q
    |||||||||| |||| | |||||||||    
T  21249462 actagttttaatcctttctgttagttt 21249488  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 544
Target Start/End: Complemental strand, 21249678 - 21249629
Alignment:
Q  494 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtc 544  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  21249678 cttattcaatcatctt-gtcccttaacttaattgattgtcttaatttggtc 21249629  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 21249511 - 21249559
Alignment:
Q  559 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 607  Q
    |||||||||||| |||| ||||||||| | |||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtcct 21249559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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