View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7520_low_3 (Length: 745)

Name: NF7520_low_3
Description: NF7520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7520_low_3
NF7520_low_3
[»] chr3 (6 HSPs)
chr3 (260-745)||(31423810-31424288)
chr3 (420-636)||(24712244-24712462)
chr3 (23-78)||(31423573-31423628)
chr3 (638-739)||(24712584-24712684)
chr3 (144-175)||(31423694-31423725)
chr3 (680-741)||(24099360-24099421)
[»] chr8 (6 HSPs)
chr8 (364-594)||(31503540-31503772)
chr8 (424-521)||(3679052-3679149)
chr8 (533-631)||(17820059-17820158)
chr8 (653-744)||(3679406-3679497)
chr8 (653-699)||(17819879-17819925)
chr8 (656-745)||(30236157-30236246)
[»] chr6 (4 HSPs)
chr6 (499-594)||(5746424-5746519)
chr6 (680-745)||(34105400-34105465)
chr6 (638-699)||(15487622-15487682)
chr6 (704-745)||(32935368-32935409)
[»] chr4 (2 HSPs)
chr4 (677-745)||(39041303-39041371)
chr4 (638-744)||(6599975-6600081)
[»] chr2 (3 HSPs)
chr2 (638-745)||(23650331-23650437)
chr2 (704-745)||(31902443-31902484)
chr2 (704-745)||(39338894-39338935)
[»] chr7 (3 HSPs)
chr7 (420-466)||(26386589-26386635)
chr7 (670-745)||(34389939-34390014)
chr7 (651-736)||(43344918-43345003)
[»] chr5 (2 HSPs)
chr5 (419-461)||(25658554-25658596)
chr5 (704-745)||(25992018-25992059)
[»] scaffold0620 (1 HSPs)
scaffold0620 (680-745)||(3817-3882)
[»] chr1 (3 HSPs)
chr1 (667-745)||(24658903-24658981)
chr1 (704-745)||(38544767-38544808)
chr1 (704-745)||(46603403-46603444)
[»] scaffold1613 (1 HSPs)
scaffold1613 (704-745)||(1046-1087)


Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 260 - 745
Target Start/End: Original strand, 31423810 - 31424288
Alignment:
Q  260 tcacgttggttttgtgtggttgtttggtgtggtactgttagcggtggagcgagatggttgcgtaggtttgtgtagttgtgtgtgatggtttgtagcgttc 359  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  31423810 tcacgttggttttgtgtggttgtttggtgtggtactgttagcagtggagcgagatggttgtgtaggtttgtgtagtggtgtgtgatggtttgtagcgttc 31423909  T
Q  360 ggatggggtggtcgtggataattttgactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagg 459  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31423910 ggatggggtgattgtggataatttggactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagg 31424009  T
Q  460 gaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagct 559  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31424010 gaggtggatgtttttt-------tggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccatcgtcgctagct 31424102  T
Q  560 cttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctgatgttggctagtcttcgtgtcttct 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31424103 cttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctgatgttggctagtcttcgtgtcttct 31424202  T
Q  660 ccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31424203 ccggttgatcgggggtgaggggtgccttactgatttgttttcagagtctggtaggccggtcgcttttgattcgagatcgggagtca 31424288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 420 - 636
Target Start/End: Original strand, 24712244 - 24712462
Alignment:
Q  420 gagctgattaagtgggggtggttgatgttgtttaggtagggaggtggatgtttt-ttggtgttttggtggatggtagtgtactcttggtgtttctgttgt 518  Q
    ||||||||||||||||| |||| || ||| |||||||||||||||||||||||| |||||||| | |||| ||||||||  |||||||||||||||||||    
T  24712244 gagctgattaagtgggg-tggtagacgttttttaggtagggaggtggatgttttattggtgttgttgtgggtggtagtgagctcttggtgtttctgttgt 24712342  T
Q  519 aggctgcctttg-tcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagt 615  Q
    |||||||||||| | |||||||  ||||||||||||||||||||||||| ||||| |||| |||||||| ||| |||||||||  |||||||||| |||     
T  24712343 aggctgcctttgtttttgggtccatatccgtcgtcgctagctcttggtg-cttttagttgattttgtgtttggttgcttgagtgcgggtggttttcgagc 24712441  T
Q  616 tgagccttttccttttctgat 636  Q
    |||||||||||||| ||||||    
T  24712442 tgagccttttccttctctgat 24712462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 31423573 - 31423628
Alignment:
Q  23 tcacggttgttttgttgttcacagattttgaggtggttgctgagtttgaatgttga 78  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  31423573 tcacggttgtgttgttgttcacggattttgaggtggttgctgagtttgaatgttga 31423628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 739
Target Start/End: Original strand, 24712584 - 24712684
Alignment:
Q  638 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 737  Q
    |||||| ||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||   |||| |||| |||| |||  |||| ||||||||||    
T  24712584 ttggctggtcatggtgtcttctccggttgatcgggg-tgaggggtgccttactgatttgtttctggagtatggtgggccggtcattttttattcgagatc 24712682  T
Q  738 gg 739  Q
    ||    
T  24712683 gg 24712684  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 175
Target Start/End: Original strand, 31423694 - 31423725
Alignment:
Q  144 agagagggtgccgtcagcgggaacaacagaga 175  Q
    ||||||||||||||||||||||||||||||||    
T  31423694 agagagggtgccgtcagcgggaacaacagaga 31423725  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 741
Target Start/End: Complemental strand, 24099421 - 24099360
Alignment:
Q  680 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcggga 741  Q
    ||||||||| ||||||||||  |||||||||| ||||  || |||||||||||| |||||||    
T  24099421 ggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcgatatcggga 24099360  T

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Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 364 - 594
Target Start/End: Complemental strand, 31503772 - 31503540
Alignment:
Q  364 ggggtggtcgtggataattttgactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagggagg 463  Q
    |||||||||||||||||| | ||||| ||| ||   | || ||  ||||| ||| ||||||||||||  |||| |||| ||  ||| ||||||||| |||    
T  31503772 ggggtggtcgtggataatctagactcagatctgaagtcgaaacatttgatggacgagagctgattaacaggggatggtagacattggttaggtaggaagg 31503673  T
Q  464 tggatgttttt-tggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctctt 562  Q
    ||||||||||| ||||||||||||||||||| |||  |||| | ||||||| ||||  || |||| ||| ||| |||  |||||| | ||||||||||||    
T  31503672 tggatgtttttatggtgttttggtggatggtggtgagctctagatgtttctattgtttgccgcctctgttttgagtccatatccgccatcgctagctctt 31503573  T
Q  563 ggtgccttttggttg-ttttgtgtatgggtgct 594  Q
    | ||| ||||||||| |||||| | ||||||||    
T  31503572 gttgcattttggttgcttttgtatttgggtgct 31503540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 424 - 521
Target Start/End: Original strand, 3679052 - 3679149
Alignment:
Q  424 tgattaagtgggggtggttgatgttgtttaggtagggaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtagg 521  Q
    |||||||| ||||||||| || |||||||||||||||||||| ||||||  || |||||| |||| |||| |||  || |||||||||||||||||||    
T  3679052 tgattaagagggggtggtagacgttgtttaggtagggaggtgaatgtttaatgatgtttttgtgggtggtggtgagctattggtgtttctgttgtagg 3679149  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 533 - 631
Target Start/End: Complemental strand, 17820158 - 17820059
Alignment:
Q  533 ttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagttgagccttttccttt 630  Q
    |||||||  |||| |||||||||| |||||||||| ||||||||| |||||||| |||| |||||||| ||||||||||| ||| | |||||||||||||    
T  17820158 ttgggtccatatctgtcgtcgctaactcttggtgc-ttttggttgattttgtgtttgggagcttgagtgtgggtggttttcgagcttagccttttccttt 17820060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 653 - 744
Target Start/End: Original strand, 3679406 - 3679497
Alignment:
Q  653 gtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtc 744  Q
    |||||||||||||||||| ||||||| ||| | ||||||||||||||  |||||||    |||   || |||||||||||||||||||||||    
T  3679406 gtcttctccggttgatcgagggtgaggggtactttactgatttgtttctagagtctaactggcttatcacttttgattcgagatcgggagtc 3679497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 699
Target Start/End: Complemental strand, 17819925 - 17819879
Alignment:
Q  653 gtcttctccggttgatcgggggtgagaggtgccttactgatttgttt 699  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  17819925 gtcttctccggtagattgggggtgaggggtgccttactgatttgttt 17819879  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 745
Target Start/End: Complemental strand, 30236246 - 30236157
Alignment:
Q  656 ttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    ||||| ||| || ||||||| || |||||| | |||||||| |||   |||||||| || |  |||||||||||||||||||||||||||    
T  30236246 ttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtca 30236157  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 594
Target Start/End: Original strand, 5746424 - 5746519
Alignment:
Q  499 actcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttgttttgtgtatgggtgct 594  Q
    |||||| ||||||||||||| |   |||||||| |||| ||  |||||||||||||||||||||| ||| ||| ||||| ||||||| ||||||||    
T  5746424 actctttgtgtttctgttgttgatcgcctttgtgttggatccatatccgtcgtcgctagctcttgttgcgtttgggttgctttgtgtttgggtgct 5746519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 745
Target Start/End: Original strand, 34105400 - 34105465
Alignment:
Q  680 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    ||||||||| ||||||||||  ||||| |||| ||||  || ||||||||||||||||||||||||    
T  34105400 ggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtca 34105465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 699
Target Start/End: Original strand, 15487622 - 15487682
Alignment:
Q  638 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttt 699  Q
    |||||| ||| | |||||||||| ||||||||||||||| ||||| ||||| ||||||||||    
T  15487622 ttggctggtcatggtgtcttctctggttgatcgggggtg-gaggtaccttattgatttgttt 15487682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Complemental strand, 32935409 - 32935368
Alignment:
Q  704 agtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  32935409 agtctggtgggccgatcgcttttgattcgagatcgggagtca 32935368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 677 - 745
Target Start/End: Complemental strand, 39041371 - 39041303
Alignment:
Q  677 agaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||| ||||||| |||||||||| ||||||||||| ||||  || |||||||||||||||| |||||||    
T  39041371 agagatgccttaatgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtca 39041303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 744
Target Start/End: Complemental strand, 6600081 - 6599975
Alignment:
Q  638 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 737  Q
    |||||||||  | ||||||||| |||| ||||| | |||||  |  |||||||||||||  |  |||||||||| ||||  |||||||||||| ||||||    
T  6600081 ttggctagttatggtgtcttcttcggtggatcgagcgtgaggaggaccttactgatttggctctagagtctggtgggccgatcgcttttgattagagatc 6599982  T
Q  738 gggagtc 744  Q
    |||||||    
T  6599981 gggagtc 6599975  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 745
Target Start/End: Original strand, 23650331 - 23650437
Alignment:
Q  638 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 737  Q
    |||||||||  | |||||||||  ||| |||||||| |||| ||| ||||||| ||||| ||  |||||||||| |||   |||||||||||||||||||    
T  23650331 ttggctagttatggtgtcttcttaggtggatcgggg-tgaggggtaccttacttatttggttctagagtctggtgggctgatcgcttttgattcgagatc 23650429  T
Q  738 gggagtca 745  Q
    ||||||||    
T  23650430 gggagtca 23650437  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Complemental strand, 31902484 - 31902443
Alignment:
Q  704 agtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||||||| ||||| |||||||| ||||||||||||||||||    
T  31902484 agtctggtgggccaatcgcttttaattcgagatcgggagtca 31902443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Complemental strand, 39338935 - 39338894
Alignment:
Q  704 agtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  39338935 agtctggtgggccgatcgcttttgattcgagatcgggagtca 39338894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 466
Target Start/End: Complemental strand, 26386635 - 26386589
Alignment:
Q  420 gagctgattaagtgggggtggttgatgttgtttaggtagggaggtgg 466  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  26386635 gagctgattaagagggggtggtagatgttgtttaggtaaggaggtgg 26386589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 745
Target Start/End: Original strand, 34389939 - 34390014
Alignment:
Q  670 gggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||||||||  ||||| | |||||||| ||| | |||||||| ||||  || ||||||||||||||||||||||||    
T  34389939 gggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtca 34390014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 736
Target Start/End: Complemental strand, 43345003 - 43344918
Alignment:
Q  651 gtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagat 736  Q
    ||||||||| |||| |||||||| |||| ||| ||||| ||||||  ||  |||||||||| | || ||||||||||||| |||||    
T  43345003 gtgtcttcttcggtggatcggggatgaggggtaccttattgatttcgttatagagtctggtggaccggtcgcttttgatttgagat 43344918  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 461
Target Start/End: Complemental strand, 25658596 - 25658554
Alignment:
Q  419 agagctgattaagtgggggtggttgatgttgtttaggtaggga 461  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  25658596 agagctgattaagagggggtggttgatgttatttaggtaggga 25658554  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Original strand, 25992018 - 25992059
Alignment:
Q  704 agtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||||||| ||||| |||||||||||||||||||| ||||||    
T  25992018 agtctggtgggccaatcgcttttgattcgagatcgagagtca 25992059  T

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Target: scaffold0620 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 745
Target Start/End: Original strand, 3817 - 3882
Alignment:
Q  680 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    ||||||| | ||||||||||| |||||||||| ||||  ||  |||||||||||||||||||||||    
T  3817 ggtgcctcagtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtca 3882  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 667 - 745
Target Start/End: Original strand, 24658903 - 24658981
Alignment:
Q  667 atcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    ||||||||  || |||||| | |||||||| ||  | |||||||| ||||| || ||||||||||||||||||||||||    
T  24658903 atcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtca 24658981  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Complemental strand, 38544808 - 38544767
Alignment:
Q  704 agtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  38544808 agtctggtgggccgatcgcttttgattcgagatcgggagtca 38544767  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Original strand, 46603403 - 46603444
Alignment:
Q  704 agtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||||||| ||||| |||||||||||||||||||| ||||||    
T  46603403 agtctggtgggccattcgcttttgattcgagatcgagagtca 46603444  T

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Target: scaffold1613 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Complemental strand, 1087 - 1046
Alignment:
Q  704 agtctggtaggccagtcgcttttgattcgagatcgggagtca 745  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  1087 agtctggtgggccgatcgcttttgattcgagatcgggagtca 1046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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