View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7520_low_5 (Length: 411)
Name: NF7520_low_5
Description: NF7520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7520_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 20475870 - 20476234
Alignment:
| Q |
8 |
ttggtggtcctgaaaattatcctggttttagaacattgaatggcacatttaatattgagaaacatgaatctggatttggttataggcttggatattgtgt |
107 |
Q |
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| T |
20475870 |
ttggtggtcctgaaaattatcctggttttagaacattgagtggcacatttaatattgagaagcatgaatctggatttggttataggcttggatattgtgt |
20475969 |
T |
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| Q |
108 |
gaaagattctcctacttgtttggatattgggagggctcatgaagaagttgaagatgagggtggatcacgtttacatttgactcatcaagtggcttttgag |
207 |
Q |
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| T |
20475970 |
gaaagattctcctacttgtttggatattgggagggctcatgaagaagttgaagatgaaggtggatcacgtttacatttgactcatcaagtggcttttgca |
20476069 |
T |
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| Q |
208 |
gttgtgtttgttgatgctgcttcttatgaagctggaattattaagtctgttgcttgatacattcattgttaattacttcttgttatgatgaataattact |
307 |
Q |
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| T |
20476070 |
gttgtgtttgttgatgctgcttcttatgaagctggaattattaagtctgttgcttgataccttcattgttaattacttcttgttatgatgaataattact |
20476169 |
T |
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| Q |
308 |
ttgagctagcattaagtaatcattgaataggtaattgttgttcatgtaatgtgttccttccttaa |
372 |
Q |
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| T |
20476170 |
ttgagctagcattaagtaatcattgaataggtaattgttgttcatgtaatgtgttccttccttaa |
20476234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 20493685 - 20493814
Alignment:
| Q |
8 |
ttggtggtcctgaaaattatcctggttttagaacattgaatggcacatttaatattgagaaacatgaatctggatttggttataggcttggatattgtgt |
107 |
Q |
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| T |
20493685 |
ttggtggtcctgaaaattatcctggtgtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggatttggttataacttagggttttgtgt |
20493784 |
T |
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| Q |
108 |
gaaagattctcctacttgtttggatattgg |
137 |
Q |
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| T |
20493785 |
tactggatctcctacttgtttggatattgg |
20493814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 20505873 - 20505909
Alignment:
| Q |
228 |
ttcttatgaagctggaattattaagtctgttgcttga |
264 |
Q |
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| T |
20505873 |
ttcttatgaagatggaattattaagtctgttgcttga |
20505909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 20493876 - 20493909
Alignment:
| Q |
208 |
gttgtgtttgttgatgctgcttcttatgaagctg |
241 |
Q |
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| T |
20493876 |
gttgtgtttgttgatgctgctacttatgaagctg |
20493909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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