View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7520_low_6 (Length: 404)
Name: NF7520_low_6
Description: NF7520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7520_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 15883464 - 15883088
Alignment:
| Q |
9 |
gaagaatattcacctgcatttgcaaacaacttacatagctctctaattcattcaccatttcctcatcacatataatctcttctccacctggtatcaattt |
108 |
Q |
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| T |
15883464 |
gaagaatattcacctgcatttgcaaacaacttacatagctctctaattcattcaccatttcctcatcacatataatctcttctcctcctggtatcaattt |
15883365 |
T |
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| Q |
109 |
tcttagacacctcaattggtcatccacaatttcatcttcatcaccatcaatattttcttcaaccaaaatcttattagcctcagattttgaacaannnnnn |
208 |
Q |
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| T |
15883364 |
tcttagacacctcaattggtcatccacaatttcatcttcatcaccatcaatattttcttcaaccaaaatcttattagcctcagattttgaacaaattttt |
15883265 |
T |
|
| Q |
209 |
nnagagaaatcaagtgggaccatttcattttgttgataattaatccttgatgaaccttcatcaccatccttttgaagctttgtttttagagcattactcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15883264 |
ttagagaaatcaagtgggaccatttcattttgttgataattaatccttgatgaaccttcatcaccatccttttgaagcttggtttttagagcattactcc |
15883165 |
T |
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| Q |
309 |
atgcaaaaccttgagatgaaaaaaccattgccatgtccacttcatacttgacaacactttcaacattcttggcttct |
385 |
Q |
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| T |
15883164 |
atgcaaaaccttgagatgaaaaaaccattgccatgtccacttcatacttgacaacactttcaacattcttggcttct |
15883088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 53071427 - 53071509
Alignment:
| Q |
275 |
tccttttgaagctttgtttttagagcattactccatgcaaaaccttgagatgaaaaaaccattgccatgtccacttcatactt |
357 |
Q |
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| T |
53071427 |
tccttttgaagcttgagtttaaggccatcactccatgcaaaaccttgtgctgatgaaaccattgccatgtccacttcatactt |
53071509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 53071242 - 53071335
Alignment:
| Q |
9 |
gaagaatattcacctgcatttgcaaacaacttacatagctctctaattcattcaccatttcctcatcacatataatctcttctccacctggtatcaa |
105 |
Q |
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|||||| ||||||||||||||| ||||| |||| ||| || ||||||||||| || | || |||||||| ||| ||||||||||| |||||||| |
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| T |
53071242 |
gaagaacattcacctgcatttgtaaacatcttatataactttctaattcattaacaacttgttcatcaca---aatatcttctccaccaggtatcaa |
53071335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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