View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7521_high_1 (Length: 594)
Name: NF7521_high_1
Description: NF7521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7521_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Complemental strand, 43581073 - 43580507
Alignment:
| Q |
13 |
aatatttattcttggctttgaccaacaattcaatttgaatcactcaagtatgtgacaaataattttgggataaaatatatatgtttagggtcttgtaaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43581073 |
aatatttattcttggctttgaccaacaattcaatttgaatcactcaagtatgtgacaaataattttgggataaaatatatatgtttagggtcttgtaaaa |
43580974 |
T |
|
| Q |
113 |
tttgggtttttcatttatagtccgtatnnnnnnntgaaatgtttgtgtacttctaaaacttttcgtatgtcttcgcatttgaaccctttaatgtaagttc |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43580973 |
tttgggtttttcatttatagtccgtataaaaaaatgaaatgtttgtgtacttctaaaacttttcgtatgtcttcgcatttgaaccctttaatgtaagttc |
43580874 |
T |
|
| Q |
213 |
ataggacctaaatctagtttagattgagttaggttttgattagggtccaaaaatagtactttaaaatatatgtaaataactgcccattaagaatcacatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43580873 |
ataggacctaaatctagtttagattgagttaggttttgattagggtccaaaaatagtactttaaaatatatgtaaataactgtccattaagaatcacatc |
43580774 |
T |
|
| Q |
313 |
cctgctctccta--gaaatcttatatgcatgtttttgaaagctatgttaacatgaatcatttcacttttatacatatgaattgattcactgtatgaaaat |
410 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43580773 |
actactctcctatagaaatcttatatgcatgtttttgaaagctatgttaacatgaatcatttcacttttatacatatgaattgattcactgtatgaaaat |
43580674 |
T |
|
| Q |
411 |
tgacttattatatttttattgatgtgaattcattcacatctcaagatttatgaatgagtgaatcgactctttgtttatcaataaatattgttttaaacat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43580673 |
tgacttattatatttttattgatgtgaattcattcacagctcaagatttatgaatgagtgaatcgactctttgtttatcaataaatattgttttaaacat |
43580574 |
T |
|
| Q |
511 |
cgaattgatccgtaaaatatttatgtgtgaatatgtgaatagattcacactttctaatgagtttatt |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43580573 |
cgaattgatccgtaaaatatttatgtgtgaatatgtgaatcgattcacactttctaatgagtttatt |
43580507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University