View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7521_high_2 (Length: 570)
Name: NF7521_high_2
Description: NF7521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7521_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 1459818 - 1460370
Alignment:
| Q |
16 |
ataattacaaaatccagaacccataaaaagttcactgagcttaagaataacaagggtttcactagtaaagatagtattaggaacttcagggtatattctt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1459818 |
ataattacaaaacccagaacccataaaaagttcactgagcttaagaataacaagggtttctctagtaaagatagtattaggaaattcagggtatattctt |
1459917 |
T |
|
| Q |
116 |
tcccaataatgcatgtaatgattatcagcagcttgtcgcgaaacaacgtatttggttaccgtcaccgttttggttccgacgaattcgagagctggaacga |
215 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1459918 |
tcccaattatgcatgtaatgattaccagcagcttgtcgcgaaacaacgtatttggataccgtcaccgttttggttccgacaaattcgagagctggaacga |
1460017 |
T |
|
| Q |
216 |
gacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460018 |
gacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaa |
1460117 |
T |
|
| Q |
316 |
aatgctgatcctatctacctcctcctccacagcctccaccgttgaagtttccggctgagacattctgttacgacggcaaggtgttcttcatgattaggtt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460118 |
aatgctgatcctatctacctcctcctccatagcctccaccgctgaagtttccggctgagacattctgttacgacggcaaggtgttcttcatgattaggtt |
1460217 |
T |
|
| Q |
416 |
gacaaacagggttagggttggaagcgaatagcttttaaaagcaacaagaattagggtttcgataggcaaggtttacacttgaattgggttgggccgtatt |
515 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460218 |
gacagacagggttagggttggaagcgaatagcttttaaaagcaacaagaattagggtttcgataggcaaggtttacacttgaattgggttgggccgtatt |
1460317 |
T |
|
| Q |
516 |
tca------ccaaatccaaatcaatcagttgtctttagaaaattattcatctc |
562 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460318 |
tcaccaaatccaaatccaaatcaatcagttgtctttagaaaattattcatctc |
1460370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 207 - 334
Target Start/End: Complemental strand, 12094206 - 12094079
Alignment:
| Q |
207 |
ctggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatc |
306 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| || ||| |||||||||| |||||||| |
|
|
| T |
12094206 |
ctggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgacaaaggcttgtttggtgggaaaagaagacagaatgtgaatcaggatatc |
12094107 |
T |
|
| Q |
307 |
atctggtaaaatgctgatcctatctacc |
334 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
12094106 |
gtctggtaaattgctgatcctatctacc |
12094079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 1446672 - 1446786
Alignment:
| Q |
219 |
accatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaat |
318 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||| | |
|
|
| T |
1446672 |
accatagatgcttccatctctttgaaagaatggaagtgagaaaggcttgtttggtgggaagagaagagagaatttgaattaggatatcgtctggtaaact |
1446771 |
T |
|
| Q |
319 |
gctgatcctatctac |
333 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
1446772 |
gcttatcctatctac |
1446786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 12104530 - 12104419
Alignment:
| Q |
223 |
tagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctg |
322 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||| |
|
|
| T |
12104530 |
tagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcgtctgataaattgctg |
12104431 |
T |
|
| Q |
323 |
atcctatctacc |
334 |
Q |
| |
|
||| |||||||| |
|
|
| T |
12104430 |
atcatatctacc |
12104419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 231 - 334
Target Start/End: Complemental strand, 820515 - 820412
Alignment:
| Q |
231 |
tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc |
330 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||||||||||| |||| || ||||||||| |||| ||||||||||| ||||| || |||||||||| |
|
|
| T |
820515 |
tccatcgctttgaaagaatggaagtgacaaaggcttgtttggtaggaacagaagagagaatatgaatcaggatatcatccagtaaactgttgatcctatc |
820416 |
T |
|
| Q |
331 |
tacc |
334 |
Q |
| |
|
|||| |
|
|
| T |
820415 |
tacc |
820412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 409234 - 409117
Alignment:
| Q |
217 |
acaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaa |
316 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||| | |||||||||||||| || || || ||||||||| |
|
|
| T |
409234 |
acaccatagatgagtccatctctttgaaagaatggatgtgacaaaggcttgtttggtgggaacaaaagagagaatgtgaatcagaatctcgtctggtaaa |
409135 |
T |
|
| Q |
317 |
atgctgatcctatctacc |
334 |
Q |
| |
|
| | |||||||||||| |
|
|
| T |
409134 |
cttccaatcctatctacc |
409117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 997449 - 997570
Alignment:
| Q |
209 |
ggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcat |
308 |
Q |
| |
|
|||||| | ||| ||||||| |||||| ||||||||||| |||||| | ||||||||||||||||||| | |||||||||||| | |||||| || | |
|
|
| T |
997449 |
ggaacgtggcactatagattaatccatcgctttgaaagaatggaagttgcgaaggcttgtttggtgggaacaaaagagagaatgtggattaggatctcgt |
997548 |
T |
|
| Q |
309 |
ctggtaaaatgctgatcctatc |
330 |
Q |
| |
|
| |||||| | | ||||||||| |
|
|
| T |
997549 |
ccggtaaacttccgatcctatc |
997570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 975622 - 975723
Alignment:
| Q |
231 |
tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc |
330 |
Q |
| |
|
|||||| ||||||||||| |||||| ||| ||||||||| ||||||||| |||||||||| ||| ||||| || || || ||| |||| |||||||| |
|
|
| T |
975622 |
tccatcgctttgaaagaatggaagtgacacaggcttgttcaatgggaagagaagagagaatgcgaatcaggatgtcgtcgggaaaactgctaatcctatc |
975721 |
T |
|
| Q |
331 |
ta |
332 |
Q |
| |
|
|| |
|
|
| T |
975722 |
ta |
975723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University