View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7521_high_3 (Length: 519)
Name: NF7521_high_3
Description: NF7521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7521_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 20 - 507
Target Start/End: Original strand, 27680058 - 27680543
Alignment:
| Q |
20 |
taaaacgtttgattaaaaaattgttacctttggctgaatcttattccaaggcactcaatacactttcttccttctctcagttctcccataccaatttcca |
119 |
Q |
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| T |
27680058 |
taaaacgtttgattaaaaaattgttacctttggctgaatcttagtccaaggcactcaatacactttcttccttctctcagttctcccataccaatttcca |
27680157 |
T |
|
| Q |
120 |
cacactgcttgcaataaaccctgccacatacctgcattttccaaaaacaatgttaaataaagcaaagaattgtacaccatactcaacaataaagttacaa |
219 |
Q |
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| T |
27680158 |
cacactgcttgcaataaaccctgccacatacctgcattttccaaaaacaatgttaaataaagcaaagaattgtacaccacactcaacaataaagttacaa |
27680257 |
T |
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| Q |
220 |
cattttatacgattgtttgaaaataattttgttactgcaaatggtttttcaaaatcttagtatgtcatttctacaatcaacaatagaaacatatttaaag |
319 |
Q |
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| T |
27680258 |
cattttatacgattatttgaaaataattttgttactgcaaatggtttttcaaaatcttagtatgtcatttttataatcaacaatagtaac--atttaaag |
27680355 |
T |
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| Q |
320 |
acataccaagcatctagtcctgaaaaaataaacatagtcattgcaaatggtgcaaatcttagagtgaggaattccttgtcgtcttcgtcgaatagcacca |
419 |
Q |
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| T |
27680356 |
acataccaagcatctagtcctgaaaaaataaacatagtcattgcaaatggtgcaaatcttagagtgaggaattccttgtcgtcttcgtcgaatagcacca |
27680455 |
T |
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| Q |
420 |
ccttttcctgaagccaagctctcaccactcatggcatcatatcccatactatgctcacttgcattgctaggagtactttgaacaccaa |
507 |
Q |
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| T |
27680456 |
ccttttcctgaagccaagctctcaccactcatggcatcatatcccatactatgctcacttgccttgctaggagtactttgaacaccaa |
27680543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 32054109 - 32054220
Alignment:
| Q |
44 |
tacctttggctgaatcttattccaaggcactcaatacactttcttccttctctcagttctcccataccaatttccacaca-ctgcttgcaataaaccctg |
142 |
Q |
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||||||||||||||| | | ||||||||| || |||||||||||||||||| || ||||||||| || |||| |||||| |||| | |||||||| ||| |
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| T |
32054109 |
tacctttggctgaatttcaatccaaggcattctatacactttcttccttctaccatttctcccattcctattttcacacatctgc-tacaataaactctg |
32054207 |
T |
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| Q |
143 |
ccacatacctgca |
155 |
Q |
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| T |
32054208 |
ccgcatacctgca |
32054220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 32054661 - 32054729
Alignment:
| Q |
323 |
taccaagcatctagtcctgaaaaaataaacatagtcattgcaaatggtgcaaatcttagagtgaggaat |
391 |
Q |
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| T |
32054661 |
taccaaacatctagtgcggaagatataaacataggtactacaaatggtacaaatcttagagtgaggaat |
32054729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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