View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7521_high_6 (Length: 304)

Name: NF7521_high_6
Description: NF7521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7521_high_6
NF7521_high_6
[»] chr2 (15 HSPs)
chr2 (10-285)||(35335895-35336170)
chr2 (55-271)||(35347695-35347922)
chr2 (95-285)||(35374666-35374850)
chr2 (71-285)||(35364702-35364914)
chr2 (159-285)||(35368514-35368641)
chr2 (160-285)||(35343134-35343260)
chr2 (139-278)||(35346417-35346554)
chr2 (123-285)||(35356038-35356201)
chr2 (98-285)||(35351475-35351668)
chr2 (112-279)||(35341070-35341243)
chr2 (76-142)||(35371980-35372046)
chr2 (179-285)||(35371879-35371983)
chr2 (43-102)||(35356206-35356267)
chr2 (43-107)||(35343059-35343124)
chr2 (69-130)||(35356831-35356892)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 35336170 - 35335895
Alignment:
Q  10 aagaatatcatatatcacaggacagcgttgtataaacagaagaaatgacaaaacttaaagccattgactaaccaataaaagttcctagctaaatgaatcg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35336170 aagaatatcatatatcacaggacagcgttgtataaacagaagaaatgacaaaacttaaagccattgactaaccaataaaagttcctagctaaatgaatcg 35336071  T
Q  110 atcaacttgtcgttccactttctacatcaaacactttatatgttcccaaccattatatgcatccactcaaacattctattttgtcaatattcttgattct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35336070 atcaacttgtcgttccactttctacatcaaacactttatatgttcccaaccattatatgcatccactcaaacattttattttgtcaatattcttgattct 35335971  T
Q  210 ttgcttcttttccaacgtgtaagttgaattgtaaagacaattgccaatgtggctgcacaagatgccattagacatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  35335970 ttgcttcttttccaacgtgtaagttgaattgtaaagacaattgccaatgtggctacacaagatgccattacacatg 35335895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 55 - 271
Target Start/End: Original strand, 35347695 - 35347922
Alignment:
Q  55 tgacaaaacttaaagccattg-actaaccaataaaagttcctagctaaatgaatcgatcaacttgtcgttccactttctacatcaaacactttat----- 148  Q
    ||||||||| ||||| | ||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||         
T  35347695 tgacaaaacataaaggccttggactaaccaataaaaattcctagctaaatgaatcgattaacttgtcattccactttccacatccaacactttatgctgt 35347794  T
Q  149 atgttcccaaccattatatgcatccactcaaacattctattttgtcaatattcttgattctttgcttcttttcca-acgtg----taagttgaattgtaa 243  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    || | |||||||||     
T  35347795 atgttcccaacaattatatgcatccactcaaacattctattttgtcaatattcttgagtctttgcttcttttccatacgtgtatatatgctgaattgtag 35347894  T
Q  244 agacaattgccaatgtggctgcacaaga 271  Q
    ||||||||||||||||||||||||||||    
T  35347895 agacaattgccaatgtggctgcacaaga 35347922  T

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Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 95 - 285
Target Start/End: Complemental strand, 35374850 - 35374666
Alignment:
Q  95 tagctaaatgaatcgatcaacttgtcgttccactttctacatcaaacactttatatgttcccaaccattatatgcatccactcaaacattctattttgtc 194  Q
    |||||||||||||||||||||||||   |||||| |||||||| |||||||||||||| |||||||||| |  |||||||||||||||||||||||||||    
T  35374850 tagctaaatgaatcgatcaacttgt---tccactatctacatccaacactttatatgt-cccaaccattgt--gcatccactcaaacattctattttgtc 35374757  T
Q  195 aatattcttgattctttgcttct-tttccaacgtgtaagttgaattgtaaagacaattgccaatgtggctgcacaagatgccattagacatg 285  Q
    |||||||||||||||| ||| || ||||||||||||| | |||| |||||||||||||||||||||||||||||||||| | |||| |||||    
T  35374756 aatattcttgattcttagctgctatttccaacgtgtatgctgaa-tgtaaagacaattgccaatgtggctgcacaagattctattacacatg 35374666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 71 - 285
Target Start/End: Complemental strand, 35364914 - 35364702
Alignment:
Q  71 cattgactaaccaataaaagttcctagctaaatgaatcgatcaacttgtcgttccactttctacatcaaacactttatatgttcccaaccattatatgca 170  Q
    |||||||||||||| | || |||| ||| |||||| || ||||||||||   ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  35364914 cattgactaaccaaaagaaattccaagcaaaatgagtcaatcaacttgt---tccactttctacatctaacactttatatgt-cccaaccattatatgca 35364819  T
Q  171 tccactcaaaca-ttctattttgtcaatattcttgattctttgcttcttttcc-aacgtgtaagttgaattgtaaagacaattgccaatgtggctgcaca 268  Q
    |||||| ||| | || ||||||  || ||||||||||||||| |||||||||| ||| |||| | |||||||||||||||| ||||||||||||||||||    
T  35364818 tccactaaaaaaattatattttcccattattcttgattcttttcttcttttcccaacatgtacgctgaattgtaaagacaaatgccaatgtggctgcaca 35364719  T
Q  269 agatgccattagacatg 285  Q
    |||| |||||| |||||    
T  35364718 agatcccattacacatg 35364702  T

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Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 35368641 - 35368514
Alignment:
Q  159 ccattatatgcatccactcaaacattctattttgtcaatattcttgattctttgcttct-tttccaacgtgtaagttgaattgtaaagacaattgccaat 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| ||||||||||||||||||||||||    
T  35368641 ccattatatgcatccactcaaacattctattttgtcaatattcttgattctttgctgctatttccaacatttaagctgaattgtaaagacaattgccaat 35368542  T
Q  258 gtggctgcacaagatgccattagacatg 285  Q
    |||||||| ||| ||||||||| |||||    
T  35368541 gtggctgcccaatatgccattacacatg 35368514  T

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Target: chr2; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 35343134 - 35343260
Alignment:
Q  160 cattatatgcatccactcaaacattctattttgtcaatattcttgattctttgcttct-tttccaacgtgtaagttgaattgtaaagacaattgccaatg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| |||||||||||||||||||||||||    
T  35343134 cattatatgcatccactcaaacattctattttgtcaatattcttgattctttgctgctatttccaacatttaagctgaattgtaaagacaattgccaatg 35343233  T
Q  259 tggctgcacaagatgccattagacatg 285  Q
    ||||||| ||| ||||||||| |||||    
T  35343234 tggctgcccaatatgccattacacatg 35343260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 139 - 278
Target Start/End: Complemental strand, 35346554 - 35346417
Alignment:
Q  139 aacactttatatgttcccaaccattatatgcatccactcaaacattctattttgtcaatattcttgattctttgcttc-ttttccaacgtgtaagttgaa 237  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||| ||   ||||||||||||| |||| | |||||||||||||||| ||||    
T  35346554 aacattttatatgttcccaactattatatgcatccactcaaacattctatttggt---tattcttgattctatgctgcattttccaacgtgtaagctgaa 35346458  T
Q  238 ttgtaaagacaattgccaatgtggctgcacaagatgccatt 278  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  35346457 ttgtaaagacaattgccaatgtggctgcacaagatcccatt 35346417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 123 - 285
Target Start/End: Complemental strand, 35356201 - 35356038
Alignment:
Q  123 tccactttctacatcaaacactttatatgttcc-caaccattatatgcatccactcaaacattctattttgtcaatattcttgattctttgcttct-ttt 220  Q
    ||||||||||||||| ||||||||||||||||  || ||||||   ||||||||||||||||||||||||||||||||||||||||||| ||| || |||    
T  35356201 tccactttctacatccaacactttatatgttctacatccattaa--gcatccactcaaacattctattttgtcaatattcttgattcttagctgctattt 35356104  T
Q  221 ccaacgtgtaagttgaat-tgtaaagacaattgccaatgtggctgcacaagatgccattagacatg 285  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||| |||||    
T  35356103 ccaacgtgtaagctgaatgtgtaaagacaattgccaatgtggctgcacaagattctattacacatg 35356038  T

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Target: chr2; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 98 - 285
Target Start/End: Complemental strand, 35351668 - 35351475
Alignment:
Q  98 ctaaatgaatcgatcaacttgtcgttccactttctacatcaaacactttatatgttcccaaccattatatgcatccactcaaacattctattttgtcaat 197  Q
    |||| |||||| || ||||||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  35351668 ctaactgaatcaattaacttgttgttccactttctacttccaacactttaaatgttcccaactattatatgcatccactcaaacattcgattttttcaat 35351569  T
Q  198 attcttgattc-----tttgcttctt-ttccaacgtgtaagttgaattgtaaagacaattgccaatgtggctgcacaagatgccattagacatg 285  Q
    |||||||||||     |||||| ||| |||||||||| | | ||| || |||| ||||||||||||||||||||||||||| |||||| |||||    
T  35351568 attcttgattctttaatttgctgcttcttccaacgtgcatgctgacttataaaaacaattgccaatgtggctgcacaagattccattacacatg 35351475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 35341243 - 35341070
Alignment:
Q  112 caacttgtcgttccactttctacatcaaacactttatatgttcc-caaccattatatgcatccactcaaacattctattttgtcaat----attcttgat 206  Q
    |||| ||||||||||||||||||||  ||||||||||||||||  |||||||||   ||||||||||||||||||||||||||||||    ||||||||     
T  35341243 caacatgtcgttccactttctacattcaacactttatatgttctacaaccattaa--gcatccactcaaacattctattttgtcaatattaattcttgaa 35341146  T
Q  207 tctttgcttctt-ttccaacgtgtaagttgaattgtaaagacaa--ttgccaatgtggctgcacaagatgccatta 279  Q
    ||| |||| ||| |||||||||||| | ||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  35341145 tctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatcccatta 35341070  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 35372046 - 35371980
Alignment:
Q  76 actaaccaataaaagttcctagctaaatgaatcgatcaacttgtcgttccactttctacatcaaaca 142  Q
    |||||||||||||| ||| |||| ||||||||| ||||||||||| |||||||||||||||| ||||    
T  35372046 actaaccaataaaaattcatagcaaaatgaatcaatcaacttgtccttccactttctacatccaaca 35371980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 35371983 - 35371879
Alignment:
Q  179 aacattctattttgtcaatattcttgattctttgcttcttttc-caacgtgtaagttgaattgtaaagacaattgccaatgtggctgcacaagatgccat 277  Q
    |||||||||||| ||||   |||||||||||||| | |||||  ||||||||||| ||||||||||||| || ||||||||  |||||||||||| ||||    
T  35371983 aacattctatttagtca---ttcttgattctttgttgcttttatcaacgtgtaagctgaattgtaaagagaaatgccaatgatgctgcacaagatcccat 35371887  T
Q  278 tagacatg 285  Q
    || |||||    
T  35371886 tacacatg 35371879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 35356267 - 35356206
Alignment:
Q  43 aaacagaagaaatgacaaaacttaaag--ccattgactaaccaataaaagttcctagctaaa 102  Q
    ||||||||||||||||||||  |||||  |||||||||||||||||||| ||||||||||||    
T  35356267 aaacagaagaaatgacaaaatataaagggccattgactaaccaataaaaattcctagctaaa 35356206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 35343059 - 35343124
Alignment:
Q  43 aaacagaagaaatgacaaaacttaaagc-cattgactaaccaataaaagttcctagctaaatgaat 107  Q
    |||||| | |||||||||||| |||||  ||| ||||||||||||||| |||||||||||||||||    
T  35343059 aaacagcaaaaatgacaaaacataaaggacatagactaaccaataaaaattcctagctaaatgaat 35343124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 35356892 - 35356831
Alignment:
Q  69 gccattgactaaccaataaaagttcctagctaaatgaatcgatcaacttgtcgttccacttt 130  Q
    |||||||| |||||||||||| ||  |||| ||| ||||| |||||||||||||| ||||||    
T  35356892 gccattgaataaccaataaaaatttatagcaaaacgaatcaatcaacttgtcgtttcacttt 35356831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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