View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7521_high_7 (Length: 241)

Name: NF7521_high_7
Description: NF7521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7521_high_7
NF7521_high_7
[»] chr8 (14 HSPs)
chr8 (68-224)||(6371318-6371474)
chr8 (100-224)||(6333198-6333322)
chr8 (100-224)||(6275770-6275894)
chr8 (100-224)||(6322631-6322755)
chr8 (98-224)||(6353614-6353740)
chr8 (98-224)||(6425304-6425430)
chr8 (98-224)||(7460686-7460812)
chr8 (100-224)||(6290522-6290646)
chr8 (98-224)||(6364487-6364613)
chr8 (98-224)||(6392110-6392236)
chr8 (114-203)||(6264966-6265055)
chr8 (109-209)||(6452199-6452299)
chr8 (98-224)||(6411274-6411400)
chr8 (109-198)||(6458303-6458392)
[»] chr2 (1 HSPs)
chr2 (115-224)||(42694406-42694515)
[»] chr5 (1 HSPs)
chr5 (101-177)||(9603035-9603111)
[»] chr7 (1 HSPs)
chr7 (98-132)||(46711910-46711944)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 6371474 - 6371318
Alignment:
Q  68 ctcaaaatttgacactatgaaatnnnnnnntgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagacttt 167  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6371474 ctcaaaatttgacactatgaaataaaaaaatgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagacttt 6371375  T
Q  168 aagaggagatcgaacgggtgagcgcaaagaatgggataggatctatgactacgatgt 224  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6371374 aagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgt 6371318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 6333322 - 6333198
Alignment:
Q  100 tagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaagaat 199  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  6333322 tagacgtaccttccaagcgaaacaccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaat 6333223  T
Q  200 gggataggatctatgactacgatgt 224  Q
     ||||||||||||||||||||||||    
T  6333222 cggataggatctatgactacgatgt 6333198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 6275894 - 6275770
Alignment:
Q  100 tagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaagaat 199  Q
    |||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| || ||||| |||||||    
T  6275894 tagacatatcttccaagtgaaacaccacctccattagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaat 6275795  T
Q  200 gggataggatctatgactacgatgt 224  Q
    |||| ||||||||||||||||||||    
T  6275794 gggaaaggatctatgactacgatgt 6275770  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 6322755 - 6322631
Alignment:
Q  100 tagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaagaat 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||| ||||||| |||     
T  6322755 tagacataccttccaagtgaaacaccagctccattagtctactatagagaagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaac 6322656  T
Q  200 gggataggatctatgactacgatgt 224  Q
      ||||| |||||||||||||||||    
T  6322655 acgatagaatctatgactacgatgt 6322631  T

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Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 6353740 - 6353614
Alignment:
Q  98 tgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaaga 197  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| || |||||||| ||    
T  6353740 tgtagacataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaagga 6353641  T
Q  198 atgggataggatctatgactacgatgt 224  Q
    |||||| || || ||||| ||||||||    
T  6353640 atgggaaagaatatatgattacgatgt 6353614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 6425430 - 6425304
Alignment:
Q  98 tgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaaga 197  Q
    ||||||||||||||| |||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||| |||  || |||||||| ||    
T  6425430 tgtagacataccttccaagtgaaacaccggctccattggtgtactatagacaagaagagttgaagactttaagaggagatggaaaaggagagcgcaagga 6425331  T
Q  198 atgggataggatctatgactacgatgt 224  Q
    |||||| ||||||||||| ||||||||    
T  6425330 atgggaaaggatctatgattacgatgt 6425304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 7460812 - 7460686
Alignment:
Q  98 tgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaaga 197  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||    
T  7460812 tgtagacataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaagga 7460713  T
Q  198 atgggataggatctatgactacgatgt 224  Q
    |||||| || || ||||| || |||||    
T  7460712 atgggacagaatatatgattatgatgt 7460686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 6290646 - 6290522
Alignment:
Q  100 tagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaagaat 199  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||| || |||||||| ||||    
T  6290646 tagacataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaat 6290547  T
Q  200 gggataggatctatgactacgatgt 224  Q
    |||| || || ||||| ||||||||    
T  6290546 gggaaagaatatatgattacgatgt 6290522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 6364613 - 6364487
Alignment:
Q  98 tgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaaga 197  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||| || ||    
T  6364613 tgtagacataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaagga 6364514  T
Q  198 atgggataggatctatgactacgatgt 224  Q
    |||||| || || ||||| || |||||    
T  6364513 atgggaaagaatatatgattatgatgt 6364487  T

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Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 6392236 - 6392110
Alignment:
Q  98 tgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaaga 197  Q
    ||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||| || ||||| || ||    
T  6392236 tgtaggcataccttctaagggaaacaccagctccattactgtactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaagga 6392137  T
Q  198 atgggataggatctatgactacgatgt 224  Q
    |||||| || || ||||| || |||||    
T  6392136 atgggacagaatatatgattatgatgt 6392110  T

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Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 6265055 - 6264966
Alignment:
Q  114 aagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaagaatggga 203  Q
    |||||||||||| |||||| | |||||||| ||||||  ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6265055 aagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatggga 6264966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 6452299 - 6452199
Alignment:
Q  109 cttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaagaatgggatagga 208  Q
    |||| |||| |||||||||||||||||    |||  ||| ||||||||||| ||| | ||||||||||| |||| || || |||||||||||||||||||    
T  6452299 cttccaagtcaaacaccagctccattaaatcactttagagaagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggatagga 6452200  T
Q  209 t 209  Q
    |    
T  6452199 t 6452199  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 6411400 - 6411274
Alignment:
Q  98 tgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaaga 197  Q
    ||||| ||||||||| |||| || |||||   |||||||| |||||||   ||||||| ||||||||||||||||||||| |||| || ||||| || |     
T  6411400 tgtaggcataccttccaagtcaagcaccacaaccattagtgtactacatcaaagaagaattgaagactttaagaggagatggaactggagagcgtaaggt 6411301  T
Q  198 atgggataggatctatgactacgatgt 224  Q
    |||||| || || ||||| || |||||    
T  6411300 atgggacagaatatatgattatgatgt 6411274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 6458392 - 6458303
Alignment:
Q  109 cttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaagaa 198  Q
    |||| |||| |||||||||||||||||    | || ||| ||||||||||| ||||| ||||||||||| |||| || ||||||||||||    
T  6458392 cttccaagtcaaacaccagctccattaaatcattatagagaagaagagttgcagactctaagaggagatggaactggagagcgcaaagaa 6458303  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 42694515 - 42694406
Alignment:
Q  115 agtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatcgaacgggtgagcgcaaagaatgggataggatctatg 214  Q
    ||||||||||| |||||||||||| | || ||| ||||||| ||||| | ||||||||||||| |||| || || |||||||||||||| || |||||||    
T  42694515 agtgaaacaccggctccattagtccattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatg 42694416  T
Q  215 actacgatgt 224  Q
    | || |||||    
T  42694415 attatgatgt 42694406  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 9603035 - 9603111
Alignment:
Q  101 agacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagat 177  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||| | | | |||||||||||    
T  9603035 agacatatcttccaagtcaaacaccagctccattagtctactacagacaagaagaattgcaaaatctaagaggagat 9603111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 46711944 - 46711910
Alignment:
Q  98 tgtagacataccttctaagtgaaacaccagctcca 132  Q
    ||||||||||| |||||||||||||||||||||||    
T  46711944 tgtagacatactttctaagtgaaacaccagctcca 46711910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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