View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7521_low_4 (Length: 470)
Name: NF7521_low_4
Description: NF7521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7521_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 78 - 422
Target Start/End: Complemental strand, 43603851 - 43603507
Alignment:
| Q |
78 |
atgtcacacctaaatgtttcatcattctagatcttaattatatcccaacttggaattaaataaacggtacctgaaatacaatccacaaactccacatgac |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603851 |
atgtcacacctaaatgtttcatcattctagatcttaattatatcccaacttggaattaaataaacggtacctgaaatacaatccacaaactccacatgac |
43603752 |
T |
|
| Q |
178 |
tgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgattcactatctttatgttgttgatagttgtgatgatatccagataggaga |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603751 |
tgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgattcactatctttatgttgttgatagttgtgatgatatccagataggaga |
43603652 |
T |
|
| Q |
278 |
tgccgcgcaatccgtatttgaggtcccttgtaaaatgccagaatcgcaacaccagccatacacaataatacactcactatctttgaaattccagatattg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603651 |
tgccgcgcaatccgtatttgaggtcccttgtaaaatgccagaatcgcaacaccagccatacacaataatacactcactatctttgaaattccagatattg |
43603552 |
T |
|
| Q |
378 |
tccttatatttaccttttccaatctacacagagaaatgataatca |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603551 |
tccttatatttaccttttccaatctacacagagaaatgataatca |
43603507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 145 - 405
Target Start/End: Complemental strand, 43610193 - 43609933
Alignment:
| Q |
145 |
tacctgaaatacaatccacaaactccacatgactgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgattcactatctttatgt |
244 |
Q |
| |
|
|||||||| |||||||||||||||||| | | || | |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
43610193 |
tacctgaagtacaatccacaaactccaggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgattcactatcttcatgt |
43610094 |
T |
|
| Q |
245 |
tgttgatagttgtgatgatatccagataggagatgccgcgcaatccgtatttgaggtcccttgtaaaatgccagaatcgcaacaccagccatacacaata |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || || ||||| || | ||| |||||||||||||| ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
43610093 |
tgttgatagttgtgatgatatccagatgggaggtgacgtgcaattcgcaattggggtcccttgtaaaaggccagaatcgctacaccggccatgcacaata |
43609994 |
T |
|
| Q |
345 |
atacactcactatctttgaaattccagatattgtccttatatttaccttttccaatctaca |
405 |
Q |
| |
|
| |||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
43609993 |
aaacactccctatctttgaaattccagattttgtccttatatttaccttctccactctaca |
43609933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 131 - 398
Target Start/End: Complemental strand, 43616832 - 43616565
Alignment:
| Q |
131 |
aattaaataaacggtacctgaaatacaatccacaaactccacatgactgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgatt |
230 |
Q |
| |
|
|||||||| || |||||||||| ||||| |||||| |||||||||| ||| ||||||||||||| |||| |||||||||||||||||| |||| ||||| |
|
|
| T |
43616832 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
43616733 |
T |
|
| Q |
231 |
cactatctttatgttgttgatagttgtgatgatatccagataggagatgccgcgcaatccgtatttgaggtcccttgtaaaatgccagaatcgcaacacc |
330 |
Q |
| |
|
|| || || ||||| ||||| ||||||||||||||||||||| ||||| ||||| ||||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
43616732 |
catgatattcatgttcttgattgttgtgatgatatccagatagaagatgacgcgcgatccgtaattggggtcccttgtaaaatgccagaatcgctacacc |
43616633 |
T |
|
| Q |
331 |
agccatacacaataatacactcactatctttgaaattccagatattgtccttatatttaccttttcca |
398 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
43616632 |
ggccatgcacaataatacacttcctatctttgaaattccagattttgtccttaaatttaccttctcca |
43616565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University