View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7521_low_6 (Length: 396)
Name: NF7521_low_6
Description: NF7521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7521_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 54916791 - 54916426
Alignment:
| Q |
18 |
aagatatatgtaggtctatgtcatacatctcgtgtatatgctatgtttgagggatttattttgctaaattgagactccatttatctcatggctggatttt |
117 |
Q |
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| T |
54916791 |
aagatatatgtaggtctatgtcatacatctcgtgtatatgctatgtttgagggatttattttgctaaattgagactccatttatcttatggctggatttt |
54916692 |
T |
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| Q |
118 |
aagaaaccgtgctttctgtcattggcggttgcacacttactgnnnnnnnacaggtgagttttacaatcattttgcttctacgattggtcaaatttacaag |
217 |
Q |
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| T |
54916691 |
aagaaaccgtgctttctgtcattggcggttgcacacttactgttttttgacaggtgagttttacaatcattttgcttctacgattggtcaaatttacaag |
54916592 |
T |
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| Q |
218 |
gt--nnnnnnnnngcttcatgctcttagcttcttccaaaagactctagataatttcattttcttttaaaacaaaggatcggatgcaattactatgaattt |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54916591 |
gtaaaaaaaaaaagcttcatgctcttagcttcttccaaaagactctagataatttcattttcttttaaaacaaaggatcggatgcaattactatgaattt |
54916492 |
T |
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| Q |
316 |
acaacgtgaacatgcaaacatcttttacacacacagactcaacgaccgacaatctcattgatctaata |
383 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54916491 |
acaacgtgaacatgcaaacatctttt--acacacagactcaacgaccgacaatctcattgatctaata |
54916426 |
T |
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