View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7521_low_7 (Length: 358)

Name: NF7521_low_7
Description: NF7521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7521_low_7
NF7521_low_7
[»] chr5 (2 HSPs)
chr5 (16-259)||(36210165-36210408)
chr5 (269-318)||(36210065-36210114)
[»] chr2 (14 HSPs)
chr2 (26-215)||(31242295-31242484)
chr2 (20-196)||(31302751-31302927)
chr2 (20-215)||(31251227-31251422)
chr2 (20-201)||(31288402-31288583)
chr2 (20-201)||(31353493-31353674)
chr2 (26-215)||(31371554-31371743)
chr2 (20-201)||(31382022-31382203)
chr2 (26-187)||(31278786-31278948)
chr2 (29-192)||(31313495-31313658)
chr2 (23-159)||(31188407-31188543)
chr2 (23-162)||(31177109-31177248)
chr2 (23-162)||(31196394-31196533)
chr2 (23-162)||(31215006-31215145)
chr2 (23-162)||(31229866-31230005)
[»] chr8 (3 HSPs)
chr8 (23-156)||(19875216-19875349)
chr8 (30-159)||(21001911-21002040)
chr8 (30-159)||(21009327-21009456)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 36210408 - 36210165
Alignment:
Q  16 atacaagatttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgtta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36210408 atacaagatttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagagacattaaagccactaatgtgtta 36210309  T
Q  116 cttgataaagatctcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattagcactcgaatagccgggacatagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210308 cttgataaagatctcaatccgaagatatctgattttggtttggccaagctcgatgaagaggagaacactcacattagcactcgaatagccgggacatagt 36210209  T
Q  216 aagttcctctatttaaatttattttgtgcaaatttgatcaagaa 259  Q
    |||||||| ||||| ||||| |||| ||||||||| ||||||||    
T  36210208 aagttcctatattttaatttgttttatgcaaattttatcaagaa 36210165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 36210114 - 36210065
Alignment:
Q  269 taagtacaaaatattttagccaacttattatggattatatacatatgata 318  Q
    ||||||||||||| ||||||||| |||||||| ||| |||||||||||||    
T  36210114 taagtacaaaataatttagccaatttattatgaattttatacatatgata 36210065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 31242484 - 31242295
Alignment:
Q  26 tgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgataaag 125  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| || || ||||||||||| ||||||||||    
T  31242484 tgtgttggtattgctagaggtttagcataccttcatgaagaatcaagactgaaggttgttcacagggacatcaaggctactaatgtgttgcttgataaag 31242385  T
Q  126 atctcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattagcactcgaatagccgggacatagt 215  Q
    ||||| |||| |||||||||||||||||||||||||  || ||||| ||||| || ||||||||||||||| |||| || ||||||||||    
T  31242384 atctcgatccaaagatatctgattttggtttggccaggcttgatgaggaggataatactcacattagcactagaattgctgggacatagt 31242295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 31302927 - 31302751
Alignment:
Q  20 aagatttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttg 119  Q
    ||||||||  ||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||| ||||| || |||||||||||||| ||||    
T  31302927 aagatttgcattggtattgctagaggtttggcataccttcatgaagaatcaagactgaaggttgttcacagagacatcaaggccactaatgtgttgcttg 31302828  T
Q  120 ataaagatctcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattagcact 196  Q
    ||||||||||  | || |||||||| |||||||||||||| ||||| ||||| ||||| || |||||||||||||||    
T  31302827 ataaagatcttgagccaaagatatcggattttggtttggcgaaacttgatgaggaggacaatactcacattagcact 31302751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 31251422 - 31251227
Alignment:
Q  20 aagatttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttg 119  Q
    ||||| ||||||||||| ||||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| || || || |||||||| ||||    
T  31251422 aagatctgtgttggtatcgctagaggtttggcatacctgcatgaagaatcaagactgaaggttgttcacagggacatcaaggctaccaatgtgttgcttg 31251323  T
Q  120 ataaagatctcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattagcactcgaatagccgggacatagt 215  Q
    ||    ||||| | || |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||  |||| || ||||||||||    
T  31251322 atgcgaatctcgacccaaagatatctgattttggtttggccaagcttgatgaggaggagaatactcacattagcacaagaattgctgggacatagt 31251227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 31288583 - 31288402
Alignment:
Q  20 aagatttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttg 119  Q
    ||||| |||||||||||||||| |||||| ||||| || ||||||||||||||| |||||||||||||||||||||| || || |||||||| || ||||    
T  31288583 aagatctgtgttggtattgctaaaggtttggcatacctccatgaagaatcaagactgaaggttgttcacagggacatcaaggctactaatgttttgcttg 31288484  T
Q  120 ataaagatctcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattagcactcgaat 201  Q
    ||| | ||||  | || |||||||||||||||||||||||||| || ||||| ||||| || ||||||||||||||| ||||    
T  31288483 atacaaatcttgacccaaagatatctgattttggtttggccaagcttgatgaggaggacaatactcacattagcactagaat 31288402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 31353674 - 31353493
Alignment:
Q  20 aagatttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttg 119  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||| || || ||||||||||| ||||    
T  31353674 aagatttgtgttggtatagctagaggtttggcataccttcatgaagaatcaagactaaaggttgttcacagggacatcaaggctactaatgtgttgcttg 31353575  T
Q  120 ataaagatctcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattagcactcgaat 201  Q
    ||    ||||| | ||||||||||||||||||||||||||||| || ||||| ||||| || ||||||||||| ||| ||||    
T  31353574 atgcgaatctcgacccgaagatatctgattttggtttggccaagcttgatgaggaggacaatactcacattagtactagaat 31353493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 31371743 - 31371554
Alignment:
Q  26 tgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgataaag 125  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||| || ||||||||||| || ||||||  |     
T  31371743 tgtgttggtattgctagaggtttggcataccttcatgaagaatcaagacttaaggttgttcacagggacatcaaggccactaatgttttgcttgatgtaa 31371644  T
Q  126 atctcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattagcactcgaatagccgggacatagt 215  Q
    ||||||| || |||||||| |||||||||||||| || || ||||| ||||| || ||||||||||||||| |||| || ||||| ||||    
T  31371643 atctcaacccaaagatatcggattttggtttggcaaagcttgatgacgaggacaaaactcacattagcactagaattgctgggacctagt 31371554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 31382203 - 31382022
Alignment:
Q  20 aagatttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttg 119  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| || ||||||||||| || ||||    
T  31382203 aagatttgtgttggtattgcaagaggtttggcataccttcatgaagaatcaagactgaaggttgttcacagggacatcaaggccactaatgttttgcttg 31382104  T
Q  120 ataaagatctcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattagcactcgaat 201  Q
    |||    |||| | || |||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||| ||| ||||    
T  31382103 atacgagtctcgaccctaagatatcagattttggtttggccaaacttgatgaggaggacaaaactcacattagtactagaat 31382022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 31278948 - 31278786
Alignment:
Q  26 tgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgataaag 125  Q
    ||||||||||| || |||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||    
T  31278948 tgtgttggtatagcaagaggtttggcataccttcatgaagaatcaagactgaaggttgttcacagggacatcaaggccactaatgtgttgcttgataaag 31278849  T
Q  126 atctcaatccgaagatatctga-ttttggtttggccaaactcgatgaagaggagaacactcac 187  Q
    ||||  | || |||||||| || ||||||||||||||| || ||||| ||||| || ||||||    
T  31278848 atcttgacccaaagatatcagatttttggtttggccaagcttgatgaggaggacaaaactcac 31278786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 31313658 - 31313495
Alignment:
Q  29 gttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgataaagatc 128  Q
    |||||||||||||||||||| ||||| || || |||||||||||| |||||||||||||||||||||| || ||||| ||||| |||||  |||  ||||    
T  31313658 gttggtattgctagaggtttggcatacctccacgaagaatcaagactgaaggttgttcacagggacatcaaggccaccaatgtattactcaatagggatc 31313559  T
Q  129 tcaatccgaagatatctgattttggtttggccaaactcgatgaagaggagaacactcacattag 192  Q
    |||| || |||||||||||| ||||||||||||| ||  |||| ||||| || |||||||||||    
T  31313558 tcaacccaaagatatctgatattggtttggccaagcttcatgaggaggacaatactcacattag 31313495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 31188543 - 31188407
Alignment:
Q  23 atttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgata 122  Q
    |||||||| ||||||||||||||||| || || ||||||||||| || ||  | ||| | |||||||||||||| ||||| ||||||||||| || ||||    
T  31188543 atttgtgtcggtattgctagaggtttggcttacctacatgaagagtcgaggcttaagatagttcacagggacatcaaagcaactaatgtgttgctcgata 31188444  T
Q  123 aagatctcaatccgaagatatctgattttggtttggc 159  Q
    ||||||||||||| |||||||||||||||||||||||    
T  31188443 aagatctcaatccaaagatatctgattttggtttggc 31188407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 31177248 - 31177109
Alignment:
Q  23 atttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgata 122  Q
    ||||| || ||||||||||||||||| || || ||||||||||| || ||  | ||| | |||||||||||||| ||||| ||||||||||| || ||||    
T  31177248 atttgcgtcggtattgctagaggtttggcttacctacatgaagagtcgaggcttaagatagttcacagggacatcaaagcaactaatgtgttgctcgata 31177149  T
Q  123 aagatctcaatccgaagatatctgattttggtttggccaa 162  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  31177148 aagatctcaatccaaagatatcggattttggtttggccaa 31177109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 31196533 - 31196394
Alignment:
Q  23 atttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgata 122  Q
    ||||| || ||||||||||||||||| || || ||||||||||| || ||  | ||| | |||||||||||||| ||||| ||||||||||| || ||||    
T  31196533 atttgcgtcggtattgctagaggtttggcttacctacatgaagagtcgaggcttaagatagttcacagggacatcaaagcaactaatgtgttgctcgata 31196434  T
Q  123 aagatctcaatccgaagatatctgattttggtttggccaa 162  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  31196433 aagatctcaatccaaagatatcggattttggtttggccaa 31196394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 31215145 - 31215006
Alignment:
Q  23 atttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgata 122  Q
    ||||| || ||||||||||||||||| || || ||||||||||| || ||  | ||| | |||||||||||||| ||||| ||||||||||| || ||||    
T  31215145 atttgcgtcggtattgctagaggtttggcttacctacatgaagagtcgaggcttaagatagttcacagggacatcaaagcaactaatgtgttgctcgata 31215046  T
Q  123 aagatctcaatccgaagatatctgattttggtttggccaa 162  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  31215045 aagatctcaatccaaagatatcggattttggtttggccaa 31215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 31230005 - 31229866
Alignment:
Q  23 atttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgata 122  Q
    |||||||||||||||||| ||||||| || || ||||||||||| |||||  | ||| | ||||| |||||||| || || ||||||||||| || ||||    
T  31230005 atttgtgttggtattgctcgaggtttggcttacctacatgaagagtcaaggctaaagatagttcatagggacatcaaggcaactaatgtgttgctcgata 31229906  T
Q  123 aagatctcaatccgaagatatctgattttggtttggccaa 162  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  31229905 aagatctcaatccaaagatatccgattttggtttggccaa 31229866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 19875349 - 19875216
Alignment:
Q  23 atttgtgttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgata 122  Q
    |||||| |||||||||||| ||||||| | || || |||||||||| || | | ||| |  |||| | |||||| |||||| |||||||||| || ||||    
T  19875349 atttgtattggtattgctaaaggtttatcttacctccatgaagaataaaaaataaagatcattcatacggacatcaaagccgctaatgtgttgctagata 19875250  T
Q  123 aagatctcaatccgaagatatctgattttggttt 156  Q
    || ||||||| || |||||||| |||||||||||    
T  19875249 aatatctcaaccctaagatatcggattttggttt 19875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 21001911 - 21002040
Alignment:
Q  30 ttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgataaagatct 129  Q
    |||||||||||| ||||||||| || || |||| |||||| | | | ||| |  |||| |||||||| || |||||||||||||| || |||||||||||    
T  21001911 ttggtattgctaaaggtttagcttaccttcatggagaatcgaaaataaagatcattcatagggacatcaaggccactaatgtgttgctagataaagatct 21002010  T
Q  130 caatccgaagatatctgattttggtttggc 159  Q
    ||| || |||||||| ||||| ||| ||||    
T  21002011 caaccccaagatatcggatttcggtctggc 21002040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 21009456 - 21009327
Alignment:
Q  30 ttggtattgctagaggtttagcatatctacatgaagaatcaagattgaaggttgttcacagggacattaaagccactaatgtgttacttgataaagatct 129  Q
    |||||||||||| ||||||||| || || |||| ||| || | | | ||| |  |||| |||||||| || |||||||||||||| || |||||||||||    
T  21009456 ttggtattgctaaaggtttagcttaccttcatggagagtcgaaaataaagatcattcatagggacatcaaggccactaatgtgttgctagataaagatct 21009357  T
Q  130 caatccgaagatatctgattttggtttggc 159  Q
    ||| || |||||||| ||||| ||| ||||    
T  21009356 caaccccaagatatcggatttcggtctggc 21009327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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