View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7523_high_13 (Length: 403)

Name: NF7523_high_13
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7523_high_13
NF7523_high_13
[»] chr6 (20 HSPs)
chr6 (194-393)||(6672960-6673159)
chr6 (1-168)||(6673624-6673790)
chr6 (302-393)||(4485002-4485093)
chr6 (54-171)||(4485566-4485684)
chr6 (72-168)||(11936771-11936868)
chr6 (72-168)||(16734804-16734901)
chr6 (70-168)||(12591830-12591929)
chr6 (70-129)||(15690435-15690494)
chr6 (54-116)||(1942550-1942612)
chr6 (55-133)||(9631195-9631273)
chr6 (72-168)||(15361714-15361811)
chr6 (85-168)||(11948751-11948835)
chr6 (70-133)||(6684091-6684154)
chr6 (70-168)||(14669350-14669449)
chr6 (54-177)||(23264491-23264617)
chr6 (54-133)||(29667955-29668036)
chr6 (56-133)||(23904392-23904469)
chr6 (70-118)||(17719778-17719826)
chr6 (61-115)||(4591138-4591192)
chr6 (68-118)||(34374820-34374870)
[»] chr3 (14 HSPs)
chr3 (194-393)||(1612579-1612784)
chr3 (67-177)||(1613208-1613319)
chr3 (54-132)||(5498459-5498537)
chr3 (54-179)||(16457324-16457450)
chr3 (70-168)||(13845989-13846088)
chr3 (54-133)||(27259485-27259564)
chr3 (72-168)||(7407758-7407855)
chr3 (70-133)||(1627987-1628050)
chr3 (75-168)||(2550168-2550262)
chr3 (72-133)||(1654575-1654636)
chr3 (54-129)||(9633486-9633561)
chr3 (74-133)||(26707860-26707919)
chr3 (55-171)||(27713440-27713554)
chr3 (90-133)||(2943254-2943297)
[»] scaffold0007 (2 HSPs)
scaffold0007 (194-393)||(9249-9444)
scaffold0007 (54-179)||(8726-8850)
[»] chr7 (15 HSPs)
chr7 (194-379)||(26701562-26701757)
chr7 (54-133)||(3234308-3234387)
chr7 (54-120)||(14803113-14803179)
chr7 (54-120)||(15250107-15250173)
chr7 (72-168)||(4685407-4685504)
chr7 (70-133)||(26205455-26205518)
chr7 (70-133)||(26225018-26225081)
chr7 (54-168)||(26608543-26608658)
chr7 (54-168)||(30089716-30089831)
chr7 (70-133)||(9242524-9242587)
chr7 (70-133)||(10022121-10022184)
chr7 (57-133)||(20277400-20277476)
chr7 (54-133)||(26619143-26619221)
chr7 (73-133)||(26621131-26621191)
chr7 (54-114)||(29932407-29932467)
[»] chr2 (10 HSPs)
chr2 (54-169)||(41573374-41573490)
chr2 (194-393)||(41573949-41574144)
chr2 (72-168)||(31342720-31342817)
chr2 (57-179)||(11017441-11017564)
chr2 (70-133)||(30267000-30267063)
chr2 (70-133)||(7718182-7718245)
chr2 (70-133)||(44920955-44921017)
chr2 (70-168)||(15513664-15513763)
chr2 (58-133)||(24479137-24479212)
chr2 (73-149)||(40016591-40016667)
[»] chr8 (20 HSPs)
chr8 (54-179)||(6403574-6403700)
chr8 (54-168)||(29553610-29553725)
chr8 (72-168)||(25638806-25638903)
chr8 (72-168)||(28249079-28249176)
chr8 (54-168)||(6801834-6801949)
chr8 (70-168)||(17634475-17634574)
chr8 (57-167)||(31347333-31347444)
chr8 (75-168)||(45356116-45356210)
chr8 (70-133)||(5528740-5528803)
chr8 (70-168)||(25637641-25637740)
chr8 (70-123)||(19369960-19370013)
chr8 (70-123)||(19448445-19448498)
chr8 (70-123)||(19532578-19532631)
chr8 (57-164)||(5650953-5651061)
chr8 (74-132)||(29345432-29345490)
chr8 (54-117)||(19341476-19341540)
chr8 (54-118)||(31369161-31369225)
chr8 (54-168)||(14997602-14997717)
chr8 (55-133)||(5000661-5000739)
chr8 (70-123)||(18766914-18766967)
[»] chr4 (10 HSPs)
chr4 (58-133)||(24559035-24559110)
chr4 (54-168)||(4881073-4881188)
chr4 (70-133)||(47066074-47066137)
chr4 (75-168)||(43600269-43600363)
chr4 (70-133)||(53300348-53300411)
chr4 (70-123)||(1685002-1685055)
chr4 (54-116)||(4923690-4923752)
chr4 (70-123)||(1152041-1152094)
chr4 (55-133)||(26075290-26075368)
chr4 (60-133)||(4904180-4904253)
[»] chr1 (15 HSPs)
chr1 (54-168)||(12189933-12190048)
chr1 (70-168)||(16222775-16222874)
chr1 (54-149)||(28636884-28636979)
chr1 (54-133)||(897436-897515)
chr1 (54-133)||(5911704-5911783)
chr1 (70-133)||(37097380-37097443)
chr1 (70-133)||(51758750-51758813)
chr1 (70-131)||(15214324-15214385)
chr1 (57-129)||(39368684-39368756)
chr1 (82-168)||(13208621-13208708)
chr1 (58-115)||(18308133-18308190)
chr1 (93-172)||(3399642-3399722)
chr1 (70-133)||(15193916-15193979)
chr1 (92-133)||(15204613-15204654)
chr1 (54-110)||(17112906-17112962)
[»] chr5 (20 HSPs)
chr5 (54-168)||(9354393-9354508)
chr5 (54-133)||(18191889-18191968)
chr5 (54-149)||(30786248-30786343)
chr5 (72-168)||(5079068-5079165)
chr5 (54-133)||(9333601-9333680)
chr5 (54-120)||(17535352-17535418)
chr5 (54-133)||(12042217-12042296)
chr5 (70-133)||(17037540-17037603)
chr5 (70-133)||(31069002-31069065)
chr5 (72-168)||(7410823-7410920)
chr5 (54-149)||(19984976-19985071)
chr5 (60-114)||(11833300-11833354)
chr5 (54-117)||(12004566-12004628)
chr5 (54-133)||(31571010-31571089)
chr5 (68-114)||(28080095-28080141)
chr5 (70-123)||(23679438-23679491)
chr5 (70-123)||(23855320-23855373)
chr5 (70-111)||(31406413-31406454)
chr5 (54-117)||(30655231-30655295)
chr5 (54-114)||(38450025-38450085)
[»] scaffold0576 (1 HSPs)
scaffold0576 (72-168)||(6698-6795)
[»] scaffold0684 (1 HSPs)
scaffold0684 (70-123)||(797-850)
[»] scaffold0069 (1 HSPs)
scaffold0069 (82-123)||(40748-40789)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 194 - 393
Target Start/End: Complemental strand, 6673159 - 6672960
Alignment:
Q  194 agtgcacatccatagccccactagtttctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaattgaccaaaagg 293  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  6673159 agtgcacatccatagccccactagtttctgcaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccacaagttgaccaaaagg 6673060  T
Q  294 nnnnnnnnaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcatctcac 393  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6673059 ttttttttaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcatttcac 6672960  T

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Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 6673790 - 6673624
Alignment:
Q  1 tcaaatatgagtaatgctagagtaagctaaatagttagagccaagaacaagctctacaacataattaagatttagtaacagttgaaaaatgtaactaaat 100  Q
    ||||||||  |||||||||||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6673790 tcaaatatacgtaatgctagagtaagctaaataggtagagctaagaacatactctacaacataattaagatttagtaacagttgaaaaatgtaactaaat 6673691  T
Q  101 caagaaaaatgttactaaataaacttagtaacagttggttaattgttagtaaaacccgtgttactaaa 168  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  6673690 caagaaaaatgttactaaa-aaatttagtaacagttcgttaattgttagtaaaacccgtgttactaaa 6673624  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 4485093 - 4485002
Alignment:
Q  302 accttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcatctcac 393  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||  |||||| |||||| |||||||| ||||    
T  4485093 accttcaaagaacttgcaacaaatttaaaaacatccaaggaataaaattatatggatatatcatatcctcttctcatattctttcatttcac 4485002  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 4485684 - 4485566
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| |||||| |||| ||||||| | |||  ||||||||| ||||    
T  4485684 ctacaacataattaagatctagtatcagttgaaaaatgcaactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaa 4485585  T
Q  153 aacccgtgttactaaatag 171  Q
    |  |||||||| |||||||    
T  4485584 agtccgtgttattaaatag 4485566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 11936868 - 11936771
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag-taaaacccgtgttactaaa 168  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   ||||||||| |||| ||||||||||||||    
T  11936868 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 11936771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 16734804 - 16734901
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||| ||||||||||||||    
T  16734804 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaa 16734901  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 12591830 - 12591929
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||| ||||||||  | |   |||||||| ||||| ||||||||||||||    
T  12591830 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaa 12591929  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 15690435 - 15690494
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagt 129  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  15690435 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagt 15690494  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 1942550 - 1942612
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttact 116  Q
    |||||||||||||||||||| |||||| |||| || ||||||||||||||||||||| |||||    
T  1942550 ctacaacataattaagatttggtaacatttgataattgtaactaaatcaagaaaaatattact 1942612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 9631273 - 9631195
Alignment:
Q  55 tacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    |||||||||||| ||||||||||||| ||||||| | | ||||||||||||| || |||||||| |||| |||||||||    
T  9631273 tacaacataattgagatttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaaca 9631195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 15361714 - 15361811
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||| || |||||||||||    
T  15361714 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaa 15361811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 11948835 - 11948751
Alignment:
Q  85 aaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag-taaaacccgtgttactaaa 168  Q
    |||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   ||||||||| |||| ||||||||||||||    
T  11948835 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 11948751  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 6684091 - 6684154
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| || |||| ||||||| ||||||||||||||||||||| |||| |||||||||    
T  6684091 atttagtaacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaaca 6684154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 14669449 - 14669350
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| || | |||| | |  ||||||||| |||||  |||||||||||||    
T  14669449 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaa 14669350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 23264617 - 23264491
Alignment:
Q  54 ctacaacataattaagatttagtaacagt--tgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gt 150  Q
    ||||||||||||| |||| |||||| | |  |||||| ||| ||||||||||||||| ||||||||| |||| ||||||||| | |   |||||||| ||    
T  23264617 ctacaacataattgagatctagtaagaatattgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggt 23264518  T
Q  151 aaaacccgtgttactaaatagcatcag 177  Q
    |||| ||||||||||||| ||| ||||    
T  23264517 aaaatccgtgttactaaagagcttcag 23264491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 29668036 - 29667955
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatc--aagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||||| |||| | |||||| ||||||| |||||| |||||  ||||||||||||||||| |||| |||||||||    
T  29668036 ctacaacataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaaca 29667955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 23904469 - 23904392
Alignment:
Q  56 acaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| |||| |||||||| ||||||| ||  ||||||| |||||||| |||||||||| || |||||||||    
T  23904469 acaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaaca 23904392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 17719826 - 17719778
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaa 118  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  17719826 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaa 17719778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 4591138 - 4591192
Alignment:
Q  61 ataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttac 115  Q
    |||||||| ||||||||||| ||||||| | | ||||||||||||||||||||||    
T  4591138 ataattaacatttagtaacatttgaaaattattactaaatcaagaaaaatgttac 4591192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 34374820 - 34374870
Alignment:
Q  68 agatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaa 118  Q
    ||||| ||||||| || |||||||||| |||||||||||||||||||||||    
T  34374820 agattaagtaacaattaaaaaatgtaattaaatcaagaaaaatgttactaa 34374870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 194 - 393
Target Start/End: Complemental strand, 1612784 - 1612579
Alignment:
Q  194 agtgcacatccatagccccactagtttctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaattgaccaaaagg 293  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| || || ||||| ||||||    
T  1612784 agtgcacatccatagccccactagtttctgcaatgcaatatcctcaagcatgcctacgattagcccccttagctttcatcatcacaagttgacaaaaagg 1612685  T
Q  294 --nnnnnnnnaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatgg----atataacaagtcctctgctcatagtctttca 387  Q
              ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||| || |||||||    
T  1612684 ttttatttttaccttcgaagaacttgcaacaaatttgaaaacatccaaggaataaaattatatggatatatatatcaagtcctctgctcgtattctttca 1612585  T
Q  388 tctcac 393  Q
    | ||||    
T  1612584 tttcac 1612579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 1613319 - 1613208
Alignment:
Q  67 aagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttact 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||| ||| ||||| ||| |||||||    
T  1613319 aagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttact 1613220  T
Q  166 aaatagcatcag 177  Q
    ||||||| ||||    
T  1613219 aaatagcttcag 1613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 5498459 - 5498537
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaac 132  Q
    ||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5498459 ctacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaac 5498537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 16457450 - 16457324
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    ||||||||| ||| ||||| |  |||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||   |||||||| ||||    
T  16457450 ctacaacatgattgagattcaacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 16457351  T
Q  153 aacccgtgttactaaatagcatcagta 179  Q
    | | |||||||||||| ||| ||||||    
T  16457350 agctcgtgttactaaaaagcttcagta 16457324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 13845989 - 13846088
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||| ||||||||||||||    
T  13845989 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 13846088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 27259564 - 27259485
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||||| ||||||||||||| ||||||| | | ||||||||||| ||||||||||||| |||| |||||||||    
T  27259564 ctacaacataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaaca 27259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 7407855 - 7407758
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||| |||| |||| |||| |||   |||||||| ||||| ||||||||||||||    
T  7407855 ttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 7407758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 1628050 - 1627987
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||| |||||||||    
T  1628050 atttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaaca 1627987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 2550168 - 2550262
Alignment:
Q  75 gtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||| || |||||||||||    
T  2550168 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaa 2550262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 1654575 - 1654636
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| ||||    
T  1654575 ttagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 1654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 9633561 - 9633486
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagt 129  Q
    ||||||||||||| ||||||||||||| ||||||| | | |||||||| | |||||||||||||| |||| |||||    
T  9633561 ctacaacataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagt 9633486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 26707860 - 26707919
Alignment:
Q  74 agtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||| |||||||  || ||||||||||||||||||||||||| |||| |||||||||    
T  26707860 agtaacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaaca 26707919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 27713554 - 27713440
Alignment:
Q  55 tacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaa 153  Q
    |||| ||||||| ||||||||||||| || |||||||||||||| ||   ||||| |||||||| |||| ||||||||| ||   ||||||||| | |||    
T  27713554 tacagcataattgagatttagtaacatttaaaaaatgtaactaattc---aaaaaagttactaattaaatttagtaacatttaaataattgttaggcaaa 27713458  T
Q  154 acccgtgttactaaatag 171  Q
    |||  |||||||||||||    
T  27713457 acctatgttactaaatag 27713440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 2943297 - 2943254
Alignment:
Q  90 tgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||    
T  2943297 tgtaattaaatcaagaaaaatgttactaattaaatttagtaaca 2943254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 194 - 393
Target Start/End: Original strand, 9249 - 9444
Alignment:
Q  194 agtgcacatccatagccccactagtttctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaattgaccaaaagg 293  Q
    ||||||||||||||||||||||||||| || |||||||||||||| |||||||    |||||||||| |||||||||||||||| || |||||||||||     
T  9249 agtgcacatccatagccccactagtttttg-aatgcaatatcctcaagcatgcgaccgattagcccc-ttagctttcatcaccacaagttgaccaaaag- 9345  T
Q  294 nnnnnnnnaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcatctcac 393  Q
            ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||    
T  9346 -attttttaccttcgaagaacctgcaacaaatttgaaaacattgaaggaataaaactatatggatatatcaagtcctctgctcatattctttcatttcac 9444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 8726 - 8850
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttagtaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||  |||||||| ||    |||| || |  ||    
T  8726 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaat-aaacaaaatgttactaaatgaatatagtaacatttaaccaattatttggcaa 8824  T
Q  154 acccgtgttactaaatagcatcagta 179  Q
    |||| |||||||||||||| ||||||    
T  8825 acccctgttactaaatagcttcagta 8850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 194 - 379
Target Start/End: Original strand, 26701562 - 26701757
Alignment:
Q  194 agtgcacatccatagccccactagttt-ctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaa------ttgac 286  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||       || |     
T  26701562 agtgcacattcatagccccactagttttctgcaatgcaatatcctcaagcatgccaacgattagcccccttagctttcatcaccacaaccacaagttaaa 26701661  T
Q  287 caaaaggnnnnnnnn---accttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcata 379  Q
    |||||||           ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  26701662 caaaaggtttttttttttaccttcgaagaacctgcaacaaatttgaaaacatgaaaggaataaaattatatggatatatcaagtcctctgctcata 26701757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 3234308 - 3234387
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| || |||||||||    
T  3234308 ctacagcataattaagatttagtaacagttgaaaaatgtaactaaataaaaaaaaatggtactaaattaatttagtaaca 3234387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 14803179 - 14803113
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaat 120  Q
    |||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  14803179 ctacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaaat 14803113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 15250173 - 15250107
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaat 120  Q
    |||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  15250173 ctacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaaat 15250107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 4685504 - 4685407
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| ||| |||| |||| |||| |||   |||||||| ||||| ||||| ||||||||    
T  4685504 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaa 4685407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 26205518 - 26205455
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||| ||| ||||||| | ||||||||||||||||||||||||||| |||| |||||||||    
T  26205518 atttagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaaca 26205455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 26225081 - 26225018
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||| ||||| ||||||| |||||||||||||||||||||| |||||| |||| |||||||||    
T  26225081 atttaataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaaca 26225018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 26608658 - 26608543
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag-taa 152  Q
    ||||||||||||| | || |||||||| ||||||| ||| |  |||||||||||||||||||| | |||| ||||||||| |||   ||||||||| |||    
T  26608658 ctacaacataattgacatctagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataa 26608559  T
Q  153 aacccgtgttactaaa 168  Q
    | ||| ||||||||||    
T  26608558 agcccatgttactaaa 26608543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 30089716 - 30089831
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttagtaaa 153  Q
    |||||| |||||| | || |||||||| ||||||| ||| ||||||||||||||||||||||| | || | ||||||||| |||   ||||||||| |||    
T  30089716 ctacaaaataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaa 30089815  T
Q  154 a-cccgtgttactaaa 168  Q
    | ||| ||||||||||    
T  30089816 agcccatgttactaaa 30089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 9242587 - 9242524
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||||||||| |||| || ||||||    
T  9242587 atttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaaca 9242524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 10022121 - 10022184
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| |||||||||||||  |||||||||||||| |||  |||||||||    
T  10022121 atttagtaacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaaca 10022184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 20277476 - 20277400
Alignment:
Q  57 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||  |||||||| | ||||| |||||||||||||| |||||| ||| ||| |||| |||||||||    
T  20277476 caacataattatgaactagtaacactcgaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaaca 20277400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 26619221 - 26619143
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||||| | || |||||||| ||||||  ||| ||||||||||||||||||||||| | |||| ||| |||||    
T  26619221 ctacaacataattgacatctagtaacacttgaaat-tgttactaaatcaagaaaaatgttactgattaaatttattaaca 26619143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 26621191 - 26621131
Alignment:
Q  73 tagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    |||||||| ||||||| ||| ||||||| ||||||||||||||| | |||| |||| ||||    
T  26621191 tagtaacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaaca 26621131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 29932467 - 29932407
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 114  Q
    |||||||||||||  | |||||||||| ||||||||| | ||||||||  |||||||||||    
T  29932467 ctacaacataattgcgttttagtaacatttgaaaaatattactaaatcgcgaaaaatgtta 29932407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 41573374 - 41573490
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    |||||||| |||| ||||||||||||| |  |||||||||||||||||||||||||||||||||| |||| ||||||||||||    |||||||| ||||    
T  41573374 ctacaacaaaattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaa 41573473  T
Q  153 aacccgtgttactaaat 169  Q
    | |||||||||||||||    
T  41573474 accccgtgttactaaat 41573490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 393
Target Start/End: Original strand, 41573949 - 41574144
Alignment:
Q  194 agtgcacatccatagccccactagtttctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaattgaccaaaagg 293  Q
    |||||||| |||||||||||||||||| || ||||  |||||||| ||||||||   ||| | || ||| |||||||||||| | || |||||||| | |    
T  41573949 agtgcacacccatagccccactagtttttgcaatgttatatcctcaagcatgccatcgatcaacctcctaagctttcatcacaacaagttgaccaagatg 41574048  T
Q  294 nnnnnnnnaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcatctcac 393  Q
            ||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||| || || ||||||||||| |||||||| ||||    
T  41574049 tttttt--accttcgaagaacctgcaacaaatttgaaaacat-aaaggaataaaattatattgatatatcatgt-ctctgctcatattctttcatttcac 41574144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 31342817 - 31342720
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag-taaaacccgtgttactaaa 168  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   ||||||||| |||| ||||||||||||||    
T  31342817 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 31342720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 11017441 - 11017564
Alignment:
Q  57 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag-taaaac 155  Q
    |||||||||| |||| |||||||| |||||||  || ||||||| ||||||| ||||||||| |||| ||||||||| |||   ||||||||| ||||      
T  11017441 caacataattgagatctagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagt 11017540  T
Q  156 ccgtgttactaaatagcatcagta 179  Q
    ||||||||||||| ||| ||||||    
T  11017541 ccgtgttactaaaaagcttcagta 11017564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 30267000 - 30267063
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||| |||||||||    
T  30267000 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaaca 30267063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 7718182 - 7718245
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||| | ||||||| ||||||||||||||||||||| ||||||| |||| |||||||||    
T  7718182 atttagtaatacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaaca 7718245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 44920955 - 44921017
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||||| |||| |||||||||    
T  44920955 atttagtaacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaaca 44921017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 15513664 - 15513763
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||||| || |||| ||||| ||||||||||||||||||||||  |||| || |||||| |||   |||||||| ||||| | ||||||||||||    
T  15513664 atttagtaacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaa 15513763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 24479137 - 24479212
Alignment:
Q  58 aacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||| |||| |||||||| ||||||| | | |||||||||||| || ||||||||| |||| |||||||||    
T  24479137 aacataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaaca 24479212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 40016591 - 40016667
Alignment:
Q  73 tagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag 149  Q
    |||||||| ||||||| | | | ||||||||| ||||||||||| | |||| ||||||||| |||  ||||||||||    
T  40016591 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttag 40016667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 6403574 - 6403700
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    ||||||||| ||||||||||||||||| ||||||  ||||||||||| ||||||||||||||||| |||| ||||||||| |||   |||||||| ||||    
T  6403574 ctacaacatgattaagatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 6403673  T
Q  153 aacccgtgttactaaatagcatcagta 179  Q
    | ||||||||| |||| ||| ||||||    
T  6403674 agcccgtgttattaaaaagcttcagta 6403700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 29553610 - 29553725
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag-taa 152  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||| |||| |||| |||   ||||||||| |||    
T  29553610 ctacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagttaa 29553709  T
Q  153 aacccgtgttactaaa 168  Q
    | | ||||||||||||    
T  29553710 agcgcgtgttactaaa 29553725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 25638806 - 25638903
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||||||| ||||||||||    
T  25638806 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaa 25638903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 28249176 - 28249079
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||| ||||||||||||||    
T  28249176 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 28249079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 6801949 - 6801834
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    ||||||||||  | ||||||||||||| ||||||| | | |||||||||| |||||||||||||| |||| |||||||||||||   |||||||| ||||    
T  6801949 ctacaacatagatgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaa 6801850  T
Q  153 aacccgtgttactaaa 168  Q
    | ||| ||||||||||    
T  6801849 agcccctgttactaaa 6801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 17634574 - 17634475
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||| ||||| |||   ||||| || ||||| ||||||||||||||    
T  17634574 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaa 17634475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 31347333 - 31347444
Alignment:
Q  57 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag-taaaac 155  Q
    |||||| ||| | ||||||||||| ||||||| |||||| ||||||||||||||| |||||| |||| ||||||||| ||| | ||||||||| |||| |    
T  31347333 caacatgattgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaatc 31347432  T
Q  156 ccgtgttactaa 167  Q
    | ||||||||||    
T  31347433 ctgtgttactaa 31347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 45356210 - 45356116
Alignment:
Q  75 gtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||| ||||||||||||||    
T  45356210 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 45356116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 5528740 - 5528803
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| ||||    
T  5528740 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 5528803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 25637641 - 25637740
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||||| ||||||| ||||||||||| ||||||| ||||||||| |||| |||| |||| | |   |||||||| ||||| ||||||||||||||    
T  25637641 atttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaa 25637740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 19370013 - 19369960
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  19370013 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19369960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 19448445 - 19448498
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  19448445 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19448498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 19532631 - 19532578
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  19532631 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19532578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 5651061 - 5650953
Alignment:
Q  57 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaac 155  Q
    |||||||||| || || ||||||| ||||||| | | ||||||||||||||||||||||||| | || |||| |||| |||   |||||||| |||||||    
T  5651061 caacataattgagtttcagtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaac 5650962  T
Q  156 ccgtgttac 164  Q
    || ||||||    
T  5650961 ccttgttac 5650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 29345432 - 29345490
Alignment:
Q  74 agtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaac 132  Q
    ||||||| | ||||| ||||||||||||||||||||| ||||||| |||| ||||||||    
T  29345432 agtaacactcgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaac 29345490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 19341540 - 19341476
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaa-aaatgttacta 117  Q
    ||||||||||  ||||||||||||||| || |||| |||||||||||||| || |||||||||||    
T  19341540 ctacaacatatataagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttacta 19341476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 31369225 - 31369161
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaa 118  Q
    |||||||| | || ||||||| ||||| |||||||||| |||||||||| || ||||||||||||    
T  31369225 ctacaacaaagttgagatttaataacatttgaaaaatgaaactaaatcacgataaatgttactaa 31369161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 14997602 - 14997717
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    ||||||||| ||| | || |||| ||| ||||||| | | ||||| |||||||||||||||||   |||| ||||||||| |||   |||||||| ||||    
T  14997602 ctacaacatgattgacatctagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaa 14997701  T
Q  153 aacccgtgttactaaa 168  Q
    ||||| ||||||||||    
T  14997702 aacccatgttactaaa 14997717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 5000661 - 5000739
Alignment:
Q  55 tacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    |||||||||||| |||| |||| ||| ||||||| ||| |||| ||||  |||| ||||||||| |||| |||||||||    
T  5000661 tacaacataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaaca 5000739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 18766914 - 18766967
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||||||||||||| ||| ||| ||||    
T  18766914 atttagcaacacttgaaaattgtaactaaatcaagaaaaatattattaattaaa 18766967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 24559110 - 24559035
Alignment:
Q  58 aacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  24559110 aacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 24559035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 4881188 - 4881073
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    ||||||||||||| | ||  ||||||| ||||||| ||| ||||||||||||||||||||||| | |||| ||||||| | |||  ||||||||| ||||    
T  4881188 ctacaacataattgacatccagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaa 4881089  T
Q  153 aacccgtgttactaaa 168  Q
    |  |||||||||||||    
T  4881088 agtccgtgttactaaa 4881073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 47066137 - 47066074
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||| |||||||||    
T  47066137 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaaca 47066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 43600269 - 43600363
Alignment:
Q  75 gtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| || | |||   |||||||| ||||| ||||||||||||||    
T  43600269 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaa 43600363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 53300348 - 53300411
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||| ||| |||| |||||||||    
T  53300348 atttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaaca 53300411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 1685055 - 1685002
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  1685055 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 1685002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 4923752 - 4923690
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttact 116  Q
    ||||||||||||||| ||  ||||||| || |||| ||| |||||||||||||||||||||||    
T  4923752 ctacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttact 4923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 1152041 - 1152094
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||| ||||||||||||||||| ||||    
T  1152041 atttagcaacacttgaaaattgtaactaaattaagaaaaatgttactaattaaa 1152094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 26075368 - 26075290
Alignment:
Q  55 tacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    |||||||||||| | || || ||||| ||||||| ||| |||| ||||||||||  |||||||| |||| |||||||||    
T  26075368 tacaacataattgaaatctaataacaattgaaaattgttactagatcaagaaaatggttactaagtaaatttagtaaca 26075290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 4904253 - 4904180
Alignment:
Q  60 cataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||| ||  ||||||| || |||| ||| ||||||||| ||||||||||||| | |||| |||||||||    
T  4904253 cataattaacatccagtaacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaaca 4904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 12189933 - 12190048
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    ||||||||||||| ||| |||| |||| || |||||||||||||||||||||||||| ||||||| |||| ||||||||| |||   |||||||| ||||    
T  12189933 ctacaacataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaa 12190032  T
Q  153 aacccgtgttactaaa 168  Q
    | ||||||||||||||    
T  12190033 agcccgtgttactaaa 12190048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 16222775 - 16222874
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||  ||| ||||||||| |||  ||||||||| ||||| ||||||||||||||    
T  16222775 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaa 16222874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 28636884 - 28636979
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag 149  Q
    |||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||    
T  28636884 ctacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttag 28636979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 897436 - 897515
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    |||||||||||||||||| |||| ||||||||||| ||| ||||||| |||||||||||| |||| |||| |||||||||    
T  897436 ctacaacataattaagatatagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaaca 897515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 5911783 - 5911704
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||| |||| ||| |||||||| ||||||| | ||||||||||||||||||||||||| | |||| |||||||||    
T  5911783 ctacaacatgattatgatatagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaaca 5911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 37097443 - 37097380
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| |  ||| |||||||||    
T  37097443 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaaca 37097380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 51758750 - 51758813
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||| |||| ||||    
T  51758750 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaaca 51758813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 15214324 - 15214385
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaa 131  Q
    ||||||||||| ||||||| || |||||||||||||||||| ||||||| |||| |||||||    
T  15214324 atttagtaacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaa 15214385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 39368756 - 39368684
Alignment:
Q  57 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagt 129  Q
    |||||||||| | || |||||||   |||||||||| ||||||||||||||||||||||||| |||| |||||    
T  39368756 caacataattgacatctagtaacccatgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagt 39368684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 13208621 - 13208708
Alignment:
Q  82 ttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||| ||||| ||||| ||||||||||||||||| |||| |||||| || |||    ||||||| ||||||||||||||||||||    
T  13208621 ttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaa 13208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 18308133 - 18308190
Alignment:
Q  58 aacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttac 115  Q
    ||||||||| | || |||||||| ||||||| ||| ||||||||||||||||||||||    
T  18308133 aacataattgacatctagtaacatttgaaaattgttactaaatcaagaaaaatgttac 18308190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 3399642 - 3399722
Alignment:
Q  93 aactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaatagc 172  Q
    |||||||||| ||||||||||||||| |||| ||||||||| |||   |||||||| |||||| |  ||||||||||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaatctatgttactaaatagc 3399722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 15193916 - 15193979
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| |||||||  | ||| |||||||||||||||||||||| |||| ||| |||||    
T  15193916 atttagtaacacttgaaaatagcaacgaaatcaagaaaaatgttactaattaaatttattaaca 15193979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 15204613 - 15204654
Alignment:
Q  92 taactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    |||||||||||||||||||||| |||| |||| |||||||||    
T  15204613 taactaaatcaagaaaaatgttgctaactaaatttagtaaca 15204654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 17112906 - 17112962
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaat 110  Q
    ||||||||||||| | || |||||| | ||||||| ||| |||||||||||||||||    
T  17112906 ctacaacataattgaaatctagtaataattgaaaattgttactaaatcaagaaaaat 17112962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 9354508 - 9354393
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaa 152  Q
    ||||||||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||| ||| ||||| |||   |||||||| ||||    
T  9354508 ctacaacatgattgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaa 9354409  T
Q  153 aacccgtgttactaaa 168  Q
    | ||| ||||||||||    
T  9354408 agcccatgttactaaa 9354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 18191968 - 18191889
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    |||||| |||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||| |||||||||    
T  18191968 ctacaaaataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaaca 18191889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 30786248 - 30786343
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag 149  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| | | || ||||||||| |||  ||||||||||    
T  30786248 ctacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttag 30786343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 5079165 - 5079068
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||| ||||||||||||||    
T  5079165 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 5079068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 9333680 - 9333601
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||| ||| |||||| |||||| ||||||| |||||| |||||||||||||||||||||| |||| |||||||||    
T  9333680 ctacaacatgattgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaaca 9333601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 17535352 - 17535418
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaat 120  Q
    |||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  17535352 ctacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaaat 17535418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 12042296 - 12042217
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||||||||||  ||||| | ||||||| ||||||||||||||||||||||||||| | | || |||||||||    
T  12042296 ctacaacataattaagatccagtaatatttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaaca 12042217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 17037540 - 17037603
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| |||||||  |||||||||||||||||||||||||||| |||| |||||||||    
T  17037540 atttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 17037603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 31069065 - 31069002
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||| || |||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  31069065 atttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 31069002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 7410823 - 7410920
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| || |||| |||||||||||||| |||||||||||||| |||| |||| |||| |||   |||||||| ||||| ||||||||||||||    
T  7410823 ttagtaacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 7410920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 19984976 - 19985071
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgttag 149  Q
    |||||||||||||| ||  |||||||| | |||||  |||||||||||||| ||||||||||||| || | ||||||||| |||  ||||||||||    
T  19984976 ctacaacataattatgaactagtaacactcgaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttag 19985071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 11833354 - 11833300
Alignment:
Q  60 cataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 114  Q
    ||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  11833354 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtta 11833300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 12004628 - 12004566
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttacta 117  Q
    ||||||||||||| | ||||||||||| ||||||  | ||||||||||||||||||||||||||    
T  12004628 ctacaacataattgaaatttagtaacaattgaaat-tctaactaaatcaagaaaaatgttacta 12004566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 31571010 - 31571089
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaaca 133  Q
    ||||||||||||| | || |||||||| ||||||| ||| | |||| |||||||||||||||| | |||| |||||||||    
T  31571010 ctacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 31571089  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 28080095 - 28080141
Alignment:
Q  68 agatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 114  Q
    ||||||||||||| || |||||||||| |||||||||||||||||||    
T  28080095 agatttagtaacatttaaaaaatgtaattaaatcaagaaaaatgtta 28080141  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 23679438 - 23679491
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||| ||| ||||    
T  23679438 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaa 23679491  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 23855373 - 23855320
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||| ||| ||||    
T  23855373 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaa 23855320  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 31406454 - 31406413
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatg 111  Q
    |||||| |||| ||||||| ||||||||||||||||||||||    
T  31406454 atttagcaacatttgaaaattgtaactaaatcaagaaaaatg 31406413  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 30655295 - 30655231
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaa-aaatgttacta 117  Q
    ||||||||||  | ||||||||||||| || |||| |||||||||||||| || |||||||||||    
T  30655295 ctacaacatatatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttacta 30655231  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 38450085 - 38450025
Alignment:
Q  54 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 114  Q
    ||||||||||||| | || ||||||||  |||||| ||| || ||||||||||||||||||    
T  38450085 ctacaacataattgacatctagtaacacatgaaaattgttaccaaatcaagaaaaatgtta 38450025  T

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Target: scaffold0576 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 6698 - 6795
Alignment:
Q  72 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaacttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 168  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||| |||| |||| |||| |||   |||||||| ||||| || |||||||||||    
T  6698 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaa 6795  T

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Target: scaffold0684 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 850 - 797
Alignment:
Q  70 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||||||||| ||||    
T  850 atttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaa 797  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 40789 - 40748
Alignment:
Q  82 ttgaaaaatgtaactaaatcaagaaaaatgttactaaataaa 123  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||    
T  40789 ttgaaaattgtaactaaatcaagaaaattgttactaattaaa 40748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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