View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7523_high_15 (Length: 401)
Name: NF7523_high_15
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 141 - 378
Target Start/End: Complemental strand, 4374051 - 4373814
Alignment:
| Q |
141 |
tcttctgttactcttttagttacatttttgtgtttttatactaaacttacactatatattgtgctgatgatgtgtcatatcctataatttctaaaactta |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4374051 |
tcttctgttactcttttagttacatttttgtgtctttatactaaacttacactatatattgtgctgatgatgtgtcatatcctataatttctaaaactta |
4373952 |
T |
|
| Q |
241 |
ttctatccaaactggaagtattttttagctgtgtctcatatctaattctagcttccgggttcctaacgtgaaggaagaacaaccagtttatggaacaaca |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4373951 |
ttctatccaaactggaagtattttttagctgtgtcacatatctaattctagcttccgagttcctaacgtgaaggaagaaaaaccagtttatggaacaaca |
4373852 |
T |
|
| Q |
341 |
tacgattacaagcaggatgaagcgtaaatggaaactca |
378 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4373851 |
tacgattacaagcatgatgaagcgtaaatggaaactca |
4373814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 4374178 - 4374089
Alignment:
| Q |
17 |
acatcaagaccaatattcacaaaaattatcagttcattaaagctgatctctgttgacatactctagtattttatacagaagaaaccgata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4374178 |
acatcaagaccaatattcacaaaaattatcagttcattaaagctgatctctgttgacatactctagtattttatacagaagaaaccgata |
4374089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 4382348 - 4382230
Alignment:
| Q |
141 |
tcttctgttactcttttagttacatttttgtgtttttatactaaacttacactatatattgtgctgatgatgtgtcatatcctataatttctaaaactta |
240 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4382348 |
tcttctgttaatcttttagttacattattgtgtttttatactaaatttacactatacattgtgtcaatgatgtgtcatattctatagtttctaaaactta |
4382249 |
T |
|
| Q |
241 |
ttctatccaaactggaagt |
259 |
Q |
| |
|
||| |||| |||||||||| |
|
|
| T |
4382248 |
ttcaatcctaactggaagt |
4382230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 4382230 - 4382139
Alignment:
| Q |
287 |
tctagcttccgggttcctaacgtgaaggaagaacaaccagtttatggaacaacatacgattacaagcaggatgaagcgtaaatggaaactca |
378 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4382230 |
tctagcttcctagatcctaacgtgaaggaagaacgaccggtttatggaacaacatacgattacaagcaggatgaagcgtaaatggaaactca |
4382139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University