View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_16 (Length: 393)
Name: NF7523_high_16
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 43326917 - 43326563
Alignment:
| Q |
18 |
attcaaacatac--ctaatcttccaaatcatttgttgaggctaaaaatgatttttaaatttctttttaaatgaaagtatgatattagaggtaatcaaact |
115 |
Q |
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| T |
43326917 |
attcaaacatacacctaatcttccaaattatttgttgatgctaaaaatgatttttaaatttctttttaaatgaaagtatgatattagaggtaatcaaact |
43326818 |
T |
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| Q |
116 |
cgtttgcaactaagtaataaagaggaatacaaaaagaagataaaattgtttctagcttcccaaatgattaagactacgtaaggtcatcaacaaatagtga |
215 |
Q |
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| T |
43326817 |
cgtttgcaactaagtaataaagaggaatactaaaagaagataaaattgtttctagcttcccaaatgattaagactacataaggtcatcaacaaatattga |
43326718 |
T |
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| Q |
216 |
catcatcacattctttagcacatactactcaca--cttttatttataaaactcatatgagctcaatcaaatcaaatcatgtaagtctctaataaatctta |
313 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43326717 |
catcatcacattctttagcacatactactcacactcttttatttgtaaaactcatatgagctcaatcaaatcaaatcatgtaagtctctaataaatctta |
43326618 |
T |
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| Q |
314 |
tgaaactcacgatttttaattgataaaacgatagtaaaaagtgtgtattagagaa |
368 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43326617 |
tgaaactcatgatttttaattgataaaacgatagtaaaaagtgtgtattcgagaa |
43326563 |
T |
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