View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7523_high_20 (Length: 356)
Name: NF7523_high_20
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 35696787 - 35697124
Alignment:
| Q |
1 |
acgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgnnnnnnntgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35696787 |
acgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgaaaaaaatgatt |
35696886 |
T |
|
| Q |
101 |
cgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696887 |
cgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgat |
35696986 |
T |
|
| Q |
201 |
cgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccattgcacgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696987 |
cgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccattgcacgtg |
35697086 |
T |
|
| Q |
301 |
ccaagaaagacggtgaataattcaatgtttgagaaatg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35697087 |
ccaagaaagacggtgaataattcaatgtttgagaaatg |
35697124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University