View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7523_high_22 (Length: 342)

Name: NF7523_high_22
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7523_high_22
NF7523_high_22
[»] chr5 (11 HSPs)
chr5 (22-255)||(38700783-38701016)
chr5 (25-255)||(38708457-38708690)
chr5 (256-336)||(3957500-3957586)
chr5 (256-333)||(4929509-4929592)
chr5 (256-336)||(26688057-26688135)
chr5 (256-336)||(26957788-26957866)
chr5 (256-336)||(33430043-33430128)
chr5 (297-336)||(3739663-3739702)
chr5 (297-336)||(5324403-5324442)
chr5 (297-336)||(21770045-21770084)
chr5 (297-336)||(42408565-42408604)
[»] chr7 (12 HSPs)
chr7 (256-336)||(36682835-36682921)
chr7 (262-336)||(4895082-4895162)
chr7 (256-336)||(27855566-27855651)
chr7 (264-333)||(36620743-36620812)
chr7 (297-336)||(46732614-46732653)
chr7 (264-336)||(24323982-24324059)
chr7 (264-333)||(36683467-36683542)
chr7 (297-336)||(18520904-18520943)
chr7 (297-336)||(32499296-32499335)
chr7 (297-336)||(32499872-32499911)
chr7 (297-336)||(47814018-47814057)
chr7 (297-336)||(47814635-47814674)
[»] chr4 (25 HSPs)
chr4 (256-336)||(12639965-12640051)
chr4 (256-336)||(31876788-31876874)
chr4 (251-336)||(36944605-36944696)
chr4 (256-336)||(199226-199312)
chr4 (256-336)||(2713843-2713929)
chr4 (256-336)||(20422731-20422817)
chr4 (264-336)||(36945223-36945301)
chr4 (256-336)||(52597711-52597797)
chr4 (264-336)||(35427254-35427331)
chr4 (264-336)||(36111217-36111294)
chr4 (256-333)||(388753-388836)
chr4 (264-336)||(20075533-20075611)
chr4 (264-336)||(25369791-25369869)
chr4 (256-336)||(25370392-25370478)
chr4 (256-336)||(32291015-32291101)
chr4 (256-336)||(40847677-40847763)
chr4 (256-336)||(48091095-48091181)
chr4 (256-336)||(55815825-55815911)
chr4 (264-336)||(55816450-55816528)
chr4 (264-335)||(26423767-26423844)
chr4 (257-336)||(26424404-26424489)
chr4 (264-333)||(48782077-48782152)
chr4 (297-336)||(20076186-20076225)
chr4 (297-336)||(28223610-28223649)
chr4 (297-333)||(12640589-12640625)
[»] chr8 (15 HSPs)
chr8 (262-336)||(35237265-35237345)
chr8 (255-336)||(33114188-33114275)
chr8 (256-336)||(7818474-7818560)
chr8 (264-336)||(11998464-11998542)
chr8 (256-336)||(11999080-11999166)
chr8 (256-336)||(16889195-16889281)
chr8 (264-336)||(36848197-36848275)
chr8 (274-336)||(38778172-38778240)
chr8 (274-336)||(40309500-40309568)
chr8 (264-333)||(43481284-43481359)
chr8 (301-336)||(2209057-2209092)
chr8 (297-336)||(4374301-4374340)
chr8 (297-336)||(16879935-16879974)
chr8 (297-336)||(30115414-30115453)
chr8 (297-336)||(44062032-44062071)
[»] scaffold0007 (1 HSPs)
scaffold0007 (256-336)||(11266-11351)
[»] chr6 (5 HSPs)
chr6 (264-336)||(5523208-5523286)
chr6 (268-336)||(30610723-30610797)
chr6 (256-336)||(33668221-33668307)
chr6 (297-336)||(6032205-6032244)
chr6 (297-336)||(12809702-12809741)
[»] chr3 (17 HSPs)
chr3 (256-336)||(3944895-3944981)
chr3 (256-336)||(23584883-23584969)
chr3 (256-336)||(23599706-23599792)
chr3 (264-336)||(31014345-31014423)
chr3 (256-336)||(44868007-44868093)
chr3 (264-336)||(48218599-48218677)
chr3 (264-336)||(25025764-25025842)
chr3 (264-336)||(29342349-29342427)
chr3 (251-336)||(37374815-37374901)
chr3 (295-336)||(47737673-47737714)
chr3 (297-336)||(29342993-29343032)
chr3 (297-336)||(31014924-31014963)
chr3 (297-336)||(42356283-42356322)
chr3 (297-336)||(43658895-43658934)
chr3 (300-336)||(19555923-19555959)
chr3 (297-333)||(37374609-37374645)
chr3 (300-336)||(49752323-49752359)
[»] chr2 (16 HSPs)
chr2 (256-336)||(4386960-4387046)
chr2 (256-336)||(9224266-9224352)
chr2 (256-336)||(20244171-20244257)
chr2 (256-336)||(28223788-28223874)
chr2 (262-333)||(16903092-16903169)
chr2 (262-336)||(16571124-16571204)
chr2 (256-336)||(7716671-7716757)
chr2 (264-336)||(11256124-11256202)
chr2 (264-336)||(16887591-16887669)
chr2 (264-336)||(28224388-28224466)
chr2 (264-336)||(39477325-39477403)
chr2 (264-333)||(6849296-6849371)
chr2 (256-333)||(8963504-8963587)
chr2 (297-336)||(3595895-3595934)
chr2 (297-336)||(30161980-30162019)
chr2 (297-333)||(6849545-6849581)
[»] chr1 (9 HSPs)
chr1 (256-336)||(8560156-8560242)
chr1 (256-336)||(1403040-1403126)
chr1 (256-336)||(6288204-6288290)
chr1 (264-336)||(7219648-7219725)
chr1 (262-334)||(27817006-27817084)
chr1 (297-336)||(48843627-48843666)
chr1 (297-336)||(48843962-48844001)
chr1 (297-336)||(49533790-49533829)
chr1 (304-336)||(27934295-27934327)
[»] scaffold1095 (1 HSPs)
scaffold1095 (297-336)||(1532-1571)
[»] scaffold0229 (1 HSPs)
scaffold0229 (256-336)||(15233-15319)
[»] scaffold0039 (1 HSPs)
scaffold0039 (256-296)||(90615-90655)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 38701016 - 38700783
Alignment:
Q  22 gggtattcgtctttgcttctcgcaatttagatcttgctctttttcttcataacaatactccatatttttgctgcatcataagattacacgttgaagagta 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38701016 gggtattcgtctttgcttctcacaatttagatcttgctctttttcttcataacaatactccatatttttgctgcatcataagattacacgttgaagagta 38700917  T
Q  122 acaatgtcatttcgtaaataacccaaaatgaacaattttttatcattggccatcggaagagtaaacaagaaaacgagttaaacccaattattggaaaaga 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  38700916 acaatgtcatttcgtaaataacccaaaatgaacaattttttatcattggccatcggaagagtaaacaagaaaactagttaaactcaattattggaaaaga 38700817  T
Q  222 atagatagggtatggacacatgacaatttttcac 255  Q
    ||||||||||||||||||||||||||||||||||    
T  38700816 atagatagggtatggacacatgacaatttttcac 38700783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 38708690 - 38708457
Alignment:
Q  25 tattcgtctttgcttctcgcaatttagatcttgctctttttcttcataacaa--tactccatat--ttttgctgcatcataagattacacgttgaagag- 119  Q
    |||||||||||||||||| || |||||||||||||||||| |||| | ||||  | ||  ||||  ||||||||||||||||||||||| |||||||||     
T  38708690 tattcgtctttgcttctcacagtttagatcttgctctttt-cttctttacaaggttctggatataattttgctgcatcataagattacaagttgaagaga 38708592  T
Q  120 -taacaatgtcatttcgtaaataacccaaaatgaacaattttttatcattggccatcggaagagtaaa-caagaaaacgagttaaacccaattattggaa 217  Q
     |||||||||||||||| |||||||||||||| ||||| |||| ||| ||| || ||||  ||||||| ||||||||| |||||||||||| ||||||||    
T  38708591 gtaacaatgtcatttcgcaaataacccaaaataaacaaatttt-atcgttgtccctcgg--gagtaaaacaagaaaactagttaaacccaactattggaa 38708495  T
Q  218 aagaatagatagggtatggacacatgacaatttttcac 255  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  38708494 aagaatagatagggtatggtcacatgacaatttttcac 38708457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 3957500 - 3957586
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  3957500 ggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 3957586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 4929592 - 4929509
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatatt 333  Q
    ||||| |||||||||| |||||||||||| |||||||||||      |||||||||||||||||||||||| ||| || |||||    
T  4929592 ggtggcatttcacatgggaaaggttaatccttttccaccatgggaaagttggattcaatgattagattaagtgaagaatatatt 4929509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 26688135 - 26688057
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatgttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||   | ||||||||||||| |||||| ||| |||||||||||    
T  26688135 ggtggcatttcacatgggaaaggttaatcctttcccaccac--tagattcaatgattatattaagtgaagaacatattctt 26688057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 26957866 - 26957788
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatgttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||   | ||||||||||||| |||||| ||| |||||||||||    
T  26957866 ggtggcatttcacatgggaaaggttaatcctttcccaccac--tagattcaatgattatattaagtgaagaacatattctt 26957788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 33430043 - 33430128
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg-----ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| ||||||||||  ||||||||||| ||| | ||||||     ||||||||||||||||||||||| ||| |||||||||||    
T  33430043 ggtggcatttcacatggaaaaggttaatcctttcctaccatggaaagttggattcaatgattagattaagtgaagaacatattctt 33430128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 3739702 - 3739663
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  3739702 gttggattcaatgattagattaagtgaagaacatattctt 3739663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 5324442 - 5324403
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  5324442 gttggattcaatgattagattaagtgaagaacatattctt 5324403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 21770045 - 21770084
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  21770045 gttggattcaatgattagattaagtgaagaacatattctt 21770084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 42408604 - 42408565
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  42408604 gttggattcaatgattagattaagtgaagaacatattctt 42408565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 36682835 - 36682921
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||||||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  36682835 ggtggcatttcacatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 36682921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 4895162 - 4895082
Alignment:
Q  262 atttcacatgagaaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||| ||||||||||||||||||||||||      |||||||||||| ||||||||||| ||| |||||||||||    
T  4895162 atttcacatgggaaaggttaatcattttccaccatgggaaagttggattcaattattagattaagtgaagaacatattctt 4895082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 27855566 - 27855651
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg-----ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||||||| ||||||||      | |||||||||||||||||||| ||| |||||||||||    
T  27855566 ggtggcatttcacatgggaaaggttaatcatttcccaccatgagaaagttgattcaatgattagattaagtgaagaacatattctt 27855651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 36620812 - 36620743
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatgttggattcaatgattagattaagagaataacatatt 333  Q
    ||||||||  |||||||||||||||||||    |||||||||||||||||||||||| ||| ||||||||    
T  36620812 ttcacatggaaaaggttaatcattttccatggagttggattcaatgattagattaagtgaagaacatatt 36620743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 46732614 - 46732653
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  46732614 gttggattcaatgattagattaagtgaataacatattctt 46732653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 24324059 - 24323982
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg-----ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||||||| |||| |||     ||||||||||| ||||||||||| ||| |||||||||||    
T  24324059 ttcacatgggaaaggttaatcatttcccactatgggaaattggattcaataattagattaagtgaagaacatattctt 24323982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 36683542 - 36683467
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatatt 333  Q
    |||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| ||||||||    
T  36683542 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatatt 36683467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 18520904 - 18520943
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  18520904 gttggattcaatgattagattaagtgaagaacatattctt 18520943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 32499296 - 32499335
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  32499296 gttggattcaatgattagattaagtgaagaacatattctt 32499335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 32499911 - 32499872
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  32499911 gttggattcaatgattagattaagtgaagaacatattctt 32499872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 47814018 - 47814057
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  47814018 gttggattcaatgattagattaagtgaagaacatattctt 47814057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 47814674 - 47814635
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  47814674 gttggattcaatgattagattaagtgaagaacatattctt 47814635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 12639965 - 12640051
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  12639965 ggtggcatttcacatgggaaaggttaatccttttccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 12640051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 31876788 - 31876874
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  31876788 ggtggcatttcacatgggaaaggttaatccttttccaccatggaaaagttggattcaatgattagattaagtgaagaacatattctt 31876874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 36944605 - 36944696
Alignment:
Q  251 ttcacggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||| ||||| |||||||| | |||||||||||| ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  36944605 ttcaaggtggcatttcacacgtgaaaggttaatctttttccaccatggaaaagttggattcaatgattagattaagtgaagaacatattctt 36944696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 199312 - 199226
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  199312 ggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 2713929 - 2713843
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  2713929 ggtggcatttcacatgggaaaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagtgaagaacatattctt 2713843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 20422817 - 20422731
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| ||||| |||||| ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  20422817 ggtggcatttcacatgggaaagcttaatccttttccaccatggaaaagttggattcaatgattagattaagtgaagaacatattctt 20422731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 36945301 - 36945223
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  36945301 ttcacatgggaaaggttaatccttttccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 36945223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 52597797 - 52597711
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| |||| ||||||      |||||||||||||||||||||||| ||| |||||||||||    
T  52597797 ggtggcatttcacatgggaaaggttaatcctttttcaccataggaaagttggattcaatgattagattaagtgaagaacatattctt 52597711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 35427254 - 35427331
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg-----ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| |||||| |||||     ||||||||||||||||||||||| ||| |||||||||||    
T  35427254 ttcacatgggaaaggttaatccttttccgccatgggaaattggattcaatgattagattaagtgaagaacatattctt 35427331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 36111294 - 36111217
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg-----ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||| ||||||||     ||||||||||||||||||||||| ||| |||||||||||    
T  36111294 ttcacatgggaaaggttaatcctttcccaccatgggaaattggattcaatgattagattaagtgaagaacatattctt 36111217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 388753 - 388836
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatatt 333  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| ||||||||    
T  388753 ggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaaaaacatatt 388836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 20075533 - 20075611
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  20075533 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 20075611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 25369791 - 25369869
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| |||||||| |||      ||||||||||||||||||||||| ||| |||||||||||    
T  25369791 ttcacatgggaaaggttaatccttttccactatgggaaagttggattcaatgattagattaagtgaagaacatattctt 25369869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 25370478 - 25370392
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||| ||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  25370478 ggtggcattttacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 25370392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 32291015 - 32291101
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||||||| | | ||||      ||||||||||||||||||||||| ||| |||||||||||    
T  32291015 ggtggcatttcacatgggaaaggttaatcatttccaatcatgggaaagttggattcaatgattagattaagtgaagaacatattctt 32291101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 40847677 - 40847763
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| ||||||||||  ||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  40847677 ggtggcatttcacatggaaaaggttaatcctttcccaccatgagaaagttggattcaatgattagattaagtgaagaacatattctt 40847763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 48091181 - 48091095
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||| ||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  48091181 ggtggcatttcatatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 48091095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 55815825 - 55815911
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| |||| |||      ||||||||||||||||||||||| ||| |||||||||||    
T  55815825 ggtggcatttcacatgggaaaggttaatcctttcccactatgggaaagttggattcaatgattagattaagtgaagaacatattctt 55815911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 55816528 - 55816450
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  55816528 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 55816450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 26423767 - 26423844
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattct 335  Q
    |||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| ||||||||||    
T  26423767 ttcacatgggaaaggttaatcctttcccaccatgaaaaagttggattcaatgattagattaagtgaagaacatattct 26423844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 26424489 - 26424404
Alignment:
Q  257 gtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||| |||||||||| ||||||||| |  ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  26424489 gtggcatttcacatgggaaaggttagttcttttccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 26424404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 48782152 - 48782077
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatatt 333  Q
    |||||||| ||||||||||||||||  |||||||      ||||||||||||||||||||||| ||| ||||||||    
T  48782152 ttcacatgggaaaggttaatcatttcgcaccatgggaaagttggattcaatgattagattaagtgaagaacatatt 48782077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 20076225 - 20076186
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  20076225 gttggattcaatgattagattaagtgaagaacatattctt 20076186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 28223610 - 28223649
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  28223610 gttggattcaatgattagattaagtgaagaacatattctt 28223649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 12640625 - 12640589
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatatt 333  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  12640625 gttggattcaatgattagattaagcgaagaacatatt 12640589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 35237265 - 35237345
Alignment:
Q  262 atttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| |||||||||||||||    
T  35237265 atttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaataacatattctt 35237345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 33114275 - 33114188
Alignment:
Q  255 cggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  33114275 cggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 33114188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 7818474 - 7818560
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  7818474 ggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 7818560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 11998464 - 11998542
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||||||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  11998464 ttcacatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 11998542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 11999166 - 11999080
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||||||| |||||||      |||||||||||||||||||| ||| ||| |||||||||||    
T  11999166 ggtggcatttcacatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattagatgaagtgaagaacatattctt 11999080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 16889195 - 16889281
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  16889195 ggtggcatttcacatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 16889281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 36848275 - 36848197
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| ||||| |||||| ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  36848275 ttcacatgggaaagcttaatccttttccaccatggaaaagttggattcaatgattagattaagtgaagaacatattctt 36848197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 38778172 - 38778240
Alignment:
Q  274 aaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||||||||||||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  38778172 aaaggttaatcatttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 38778240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 40309568 - 40309500
Alignment:
Q  274 aaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||||||||||||| |||||||      |||||||||||||||||||||||| ||| |||||||||||    
T  40309568 aaaggttaatcatttcccaccataggaaagttggattcaatgattagattaagtgaagaacatattctt 40309500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 43481359 - 43481284
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatatt 333  Q
    ||||||||| ||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| ||||||||    
T  43481359 ttcacatgaaaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatatt 43481284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 2209057 - 2209092
Alignment:
Q  301 gattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||| |||||||||||||||    
T  2209057 gattcaatgattagattaagtgaataacatattctt 2209092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 4374340 - 4374301
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  4374340 gttggattcaatgattagattaagtgaagaacatattctt 4374301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 16879935 - 16879974
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  16879935 gttggattcaatgattagattaagtgaagaacatattctt 16879974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 30115414 - 30115453
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  30115414 gttggattcaatgattagattaagtgaagaacatattctt 30115453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 44062032 - 44062071
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  44062032 gttggattcaatgattagattaagtgaagaacatattctt 44062071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 11266 - 11351
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  11266 ggtggcatttcacatgggaaaggttaatc-ttttccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 11351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 5523208 - 5523286
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| |||||||||||      |||||||||||||||||||||||| ||| |||||||||||    
T  5523208 ttcacatgggaaaggttaatccttttccaccataggaaagttggattcaatgattagattaagtgaagaacatattctt 5523286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 30610723 - 30610797
Alignment:
Q  268 catgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||| |||||||||||||||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  30610723 catgggaaaggttaatcattttccaccatgggaaaattggattcaatgattagattaagtgaagaacatattctt 30610797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 33668221 - 33668307
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||||||| |||||||      ||||||||||||||||| |||||| ||| |||||||||||    
T  33668221 ggtggcatttcacatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattaaattaagtgaagaacatattctt 33668307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 6032205 - 6032244
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  6032205 gttggattcaatgattagattaagtgaagaacatattctt 6032244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 12809741 - 12809702
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  12809741 gttggattcaatgattagattaagtgaagaacatattctt 12809702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 3944895 - 3944981
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  3944895 ggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 3944981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 23584969 - 23584883
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  23584969 ggtggcatttcacatgggaaaggttaatcctttcccaccatggtaaagttggattcaatgattagattaagtgaagaacatattctt 23584883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 23599792 - 23599706
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  23599792 ggtggcatttcacatgggaaaggttaatcctttcccaccatggtaaagttggattcaatgattagattaagtgaagaacatattctt 23599706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 31014345 - 31014423
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||| |||||| ||||||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  31014345 ttcacatgagaaagattaatccttttccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 31014423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 44868007 - 44868093
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||  ||||||||||||||||||||||||      ||||||||||||||||||||||||  || |||||||||||    
T  44868007 ggtggcatttcacataggaaaggttaatcattttccaccatgggaaagttggattcaatgattagattaagtaaagaacatattctt 44868093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 48218599 - 48218677
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||||||||||||||||||| ||| |||| |||      ||||||||||||||||||||||| |||||||||||||||    
T  48218599 ttcacatgagaaaggttaatcttttcccactatggaaaagttggattcaatgattagattaagtgaataacatattctt 48218677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 25025842 - 25025764
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||| ||||||||      || |||||||||||||||||||||||| |||||||||||    
T  25025842 ttcacatgggaaaggttaatcctttcccaccatgggaaagtttgattcaatgattagattaagagaagaacatattctt 25025764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 29342349 - 29342427
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  29342349 ttcacatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 29342427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 37374815 - 37374901
Alignment:
Q  251 ttcacggtgggatttcacatgagaaaggttaatcattttccaccat-gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||| ||||| |||||||||| |||||||||||| ||| ||   |  |||||||||||||||||||||||| ||| |||||||||||    
T  37374815 ttcatggtggcatttcacatgggaaaggttaatcctttcccgggaaagttggattcaatgattagattaagtgaagaacatattctt 37374901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 47737714 - 47737673
Alignment:
Q  295 atgttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  47737714 atgttggattcaatgattagattaagtgaagaacatattctt 47737673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 29343032 - 29342993
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  29343032 gttggattcaatgattagattaagtgaagaacatattctt 29342993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 31014963 - 31014924
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  31014963 gttggattcaatgattagattaagtgaagaacatattctt 31014924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 42356283 - 42356322
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  42356283 gttggattcaatgattagattaagtgaagaacatattctt 42356322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 43658934 - 43658895
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  43658934 gttggattcaatgattagattaagtgaagaacatattctt 43658895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 19555959 - 19555923
Alignment:
Q  300 ggattcaatgattagattaagagaataacatattctt 336  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  19555959 ggattcaatgattagattaagtgaagaacatattctt 19555923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 37374645 - 37374609
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatatt 333  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  37374645 gttggattcaatgattagattaagtgaagaacatatt 37374609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 49752323 - 49752359
Alignment:
Q  300 ggattcaatgattagattaagagaataacatattctt 336  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  49752323 ggattcaatgattagattaagtgaagaacatattctt 49752359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 4387046 - 4386960
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  4387046 ggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 4386960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 9224266 - 9224352
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  9224266 ggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 9224352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 20244257 - 20244171
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  20244257 ggtggcatttcacatgggaaaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagtgaagaacatattctt 20244171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 28223788 - 28223874
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccat------gttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| ||| |||||||      |||||||||||||||||||||||| ||| |||||||||||    
T  28223788 ggtggcatttcacatgggaaaggttaatcctttcccaccataggaaagttggattcaatgattagattaagtgaagaacatattctt 28223874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 16903169 - 16903092
Alignment:
Q  262 atttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatatt 333  Q
    |||| ||||| |||||||||||| ||||||||||||      ||||||||||||||||||||||| ||||||||||||    
T  16903169 attttacatgggaaaggttaatccttttccaccatgagaaagttggattcaatgattagattaagtgaataacatatt 16903092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 16571124 - 16571204
Alignment:
Q  262 atttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  16571124 atttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaaaaacatattctt 16571204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 7716671 - 7716757
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||| ||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  7716671 ggtggcatttcacatgggaaatgttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 7716757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 11256124 - 11256202
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| ||||||||||||||||  |||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  11256124 ttcacatgggaaaggttaatcatttctcaccatggtaaagttggattcaatgattagattaagtgaagaacatattctt 11256202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 16887591 - 16887669
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  16887591 ttcacatgggaaaggttaatcctttcccaccatgggatagttggattcaatgattagattaagtgaagaacatattctt 16887669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 28224466 - 28224388
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  28224466 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 28224388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 39477403 - 39477325
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||| ||| |||||||||||||||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  39477403 ttcatatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 39477325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 6849296 - 6849371
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatatt 333  Q
    |||||||| |||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| ||||||||    
T  6849296 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatatt 6849371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 8963504 - 8963587
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatatt 333  Q
    ||||| |||||||||| |||||||||||| ||||| | ||||      ||||||||||||||||||||||| ||| ||||||||    
T  8963504 ggtggcatttcacatgggaaaggttaatccttttctatcatgggaaagttggattcaatgattagattaagtgaaaaacatatt 8963587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 3595934 - 3595895
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  3595934 gttggattcaatgattagattaagtgaaaaacatattctt 3595895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 30161980 - 30162019
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  30161980 gttggattcaatgattagattaagtgaagaacatattctt 30162019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 6849581 - 6849545
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatatt 333  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  6849581 gttggattcaatgattagattaagtgaagaacatatt 6849545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 8560156 - 8560242
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccacc------atgttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| |||||||||      ||||||||||||| |||||||||||| ||| |||||||||||    
T  8560156 ggtggcatttcacatgggaaaggttaatccttttccaccatgggaatgttggattcaaagattagattaagtgaagaacatattctt 8560242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 1403040 - 1403126
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| ||||||||||  ||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  1403040 ggtggcatttcacatggaaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 1403126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 6288290 - 6288204
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| |||||||||| |||||||||||| |||  |||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  6288290 ggtggcatttcacatgggaaaggttaatcctttctcaccatggagaagttggattcaatgattagattaagtgaagaacatattctt 6288204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 7219725 - 7219648
Alignment:
Q  264 ttcacatgagaaaggttaatcattttccaccatg-----ttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||| |||||||||||| ||| ||| ||||     ||||||||||||||||||||||| ||| |||||||||||    
T  7219725 ttcacatgggaaaggttaatcctttcccatcatgggaaattggattcaatgattagattaagtgaagaacatattctt 7219648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 27817084 - 27817006
Alignment:
Q  262 atttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattc 334  Q
    |||||||||| | |||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||    
T  27817084 atttcacatgggtaaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagtgaagaacatattc 27817006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 48843627 - 48843666
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  48843627 gttggattcaatgattatattaagtgaataacatattctt 48843666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 48844001 - 48843962
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  48844001 gttggattcaatgattagattaagtgaagaacatattctt 48843962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 49533790 - 49533829
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  49533790 gttggattcaatgattagattaagtgaagaacatattctt 49533829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 27934327 - 27934295
Alignment:
Q  304 tcaatgattagattaagagaataacatattctt 336  Q
    ||||||||||||||||||||| |||||||||||    
T  27934327 tcaatgattagattaagagaagaacatattctt 27934295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 1532 - 1571
Alignment:
Q  297 gttggattcaatgattagattaagagaataacatattctt 336  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1532 gttggattcaatgattagattaagtgaataacatattctt 1571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 15319 - 15233
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccatg------ttggattcaatgattagattaagagaataacatattctt 336  Q
    ||||| ||||||||||  ||||||||||| ||| ||||||||      ||||||||||||||||||||||| ||| |||||||||||    
T  15319 ggtggcatttcacatggaaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtgaagaacatattctt 15233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 90615 - 90655
Alignment:
Q  256 ggtgggatttcacatgagaaaggttaatcattttccaccat 296  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  90615 ggtggcatttcacatgggaaaggtgaatcattttccaccat 90655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University