View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_27 (Length: 325)
Name: NF7523_high_27
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 53740351 - 53740632
Alignment:
| Q |
17 |
catcaactatgttgttaacggcagaccatgatgatcgagttgcgccactacactcattgaagctattggcgg-tagtgggctatacaagcattatagatt |
115 |
Q |
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| T |
53740351 |
catcaactatgttgttaacggcagatcatgatgatcgagttgtgccactacactcattgaagctattggcggttagtgggctatacaagca-tataaatt |
53740449 |
T |
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| Q |
116 |
ttttcatcgaaaacacaacttatatttattgaaatatgttgcaagtaacagaataagtggttataaaactaaagaaattaacaaatagttgtcacata-n |
214 |
Q |
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| T |
53740450 |
ttttcattg-aaacacaacttatatttattgaattatgttgcaagtaacagaataagtggttat-aaactaaagaaattaacaaatagttgtcacatagg |
53740547 |
T |
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| Q |
215 |
nnnnnnataggtcatcattctcgtgtgaccagaccactgtgggaggaaaatcccattccagtcatcacaatttaccacccttttccttttct |
306 |
Q |
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| T |
53740548 |
ggggggataggtcgtcattctcgtgtgatca-------ctgggaggaaaatctcattccagtcatcacaatttaccacccttttccttttct |
53740632 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 8559468 - 8559514
Alignment:
| Q |
43 |
catgatgatcgagttgcgccactacactcattgaagctattggcggt |
89 |
Q |
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| T |
8559468 |
catgatgatcgtgttgtgccattacattcattgaagctattggcggt |
8559514 |
T |
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