View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_29 (Length: 302)
Name: NF7523_high_29
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 37 - 292
Target Start/End: Complemental strand, 31010507 - 31010251
Alignment:
| Q |
37 |
aatcctaaactaaaatccattatcaccatccataagatgaaagtgagtttgtctaaacaacttaattaaacgttgattgaataagggttgatcatata-- |
134 |
Q |
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| T |
31010507 |
aatcctaaactaaaatccattatccccatccataacatt---gtgagtttgtctaaacaacttaattaaacgttgattgaataagggttgatcatatata |
31010411 |
T |
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| Q |
135 |
--catgtttatgtacagaatacttataatcaactcaaaaatcttgttattatttgtttgcaaataagttcatgaccataaattattgacataagccaaac |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010410 |
tacatgtttatgtacagaatacttataatcaactcaaaaatcttgttattatttgtttgcaaataagttcatgaccataaattattgacataagccaaac |
31010311 |
T |
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| Q |
233 |
acaacttataaaaatgtgataaactctagcaaattttgtaagatagattcagataaacac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010310 |
acaacttataaaaatgtgataaactctagcaaattttgtaagatagattcagataaacac |
31010251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 30984548 - 30984340
Alignment:
| Q |
84 |
tttgtctaaacaacttaattaaacgttgattgaataagggttgatcatatacatgtttatgtacagaatacttataatcaactcaaaaatcttgttatta |
183 |
Q |
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| T |
30984548 |
tttgtctaaccaacttaattaaactttgatttaacaagtgttgatcatatacatgtttatgtacagaatacttataattaactcataaatgt--taataa |
30984451 |
T |
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| Q |
184 |
tttgtttgcaaataagttcatgac-cataaattattgacataagccaaacacaacttataaaaatgtgataaactctagcaaa-ttttgtaagatagatt |
281 |
Q |
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| T |
30984450 |
attgtttgcaaataagttccagacgtataaactattgaaatcagccaaaaacaactgataaaaatgtgataaactctagtaaatttttgtaagataggtt |
30984351 |
T |
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| Q |
282 |
cagataaacac |
292 |
Q |
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| T |
30984350 |
cagataaacac |
30984340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 30990712 - 30990504
Alignment:
| Q |
84 |
tttgtctaaacaacttaattaaacgttgattgaataagggttgatcatatacatgtttatgtacagaatacttataatcaactcaaaaatcttgttatta |
183 |
Q |
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||||||||| |||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| | | || | |
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| T |
30990712 |
tttgtctaaccaacttaattaaactttgatttaacaagtgttgatcatatacatgtttatgtacagaatacttataattaactcataaatgt--taataa |
30990615 |
T |
|
| Q |
184 |
tttgtttgcaaataagttcatgac-cataaattattgacataagccaaacacaacttataaaaatgtgataaactctagcaaa-ttttgtaagatagatt |
281 |
Q |
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|||||||||||||||||| ||| ||||| |||||| || ||||||| |||||| |||||||||||||||||||||| ||| ||||||||||||| || |
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| T |
30990614 |
attgtttgcaaataagttccagacgtataaactattgaaatcagccaaaaacaactgataaaaatgtgataaactctagtaaatttttgtaagataggtt |
30990515 |
T |
|
| Q |
282 |
cagataaacac |
292 |
Q |
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||||||||||| |
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| T |
30990514 |
cagataaacac |
30990504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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