View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_31 (Length: 298)
Name: NF7523_high_31
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 53 - 259
Target Start/End: Original strand, 5577252 - 5577457
Alignment:
| Q |
53 |
tcaaaggatccgcaatttaaagagagggaatagaaaaatttaagcacaattgtggtnnnnnnnnnttcatgtaaaatcataaagagaaaccaacaacagt |
152 |
Q |
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| T |
5577252 |
tcaaaggatctgcaatttaaagagagggagtagaaaaatttaagcacaattgtgctaaaaaaaa-ttcatgtaaaatcataaagagaaaccaataatagt |
5577350 |
T |
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| Q |
153 |
ggtcaaacatatctctctactggggcatataggaatttcagttccaccattaacctcaacaacatcaacaacaaccaactgtgatacaatgaaaaataac |
252 |
Q |
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| T |
5577351 |
ggccaaacttacctctctactggggcatataggaatttcagttcccccattaacctcaacaacatcaacaacaaccaactgtgatacaatgaaaaataac |
5577450 |
T |
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| Q |
253 |
atcaacc |
259 |
Q |
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||||||| |
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| T |
5577451 |
atcaacc |
5577457 |
T |
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