View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_35 (Length: 284)
Name: NF7523_high_35
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 126 - 267
Target Start/End: Complemental strand, 47858507 - 47858366
Alignment:
| Q |
126 |
tattgtggaactgactgaagcattcatttaaacatatggtcttaatacaaaatcacataataacagataggggcttacaatggctatgcatctcagccct |
225 |
Q |
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| T |
47858507 |
tattgtggaactgactgaagcattcatttaaacatatggtcttaatacaaaatcacataataacagataggggcttacaatggctatgcatctcagccct |
47858408 |
T |
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| Q |
226 |
cccctcttccaattccagacccaacttacaggtaactagcac |
267 |
Q |
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| T |
47858407 |
cccctcttccaattccagacccaacttacaggtaactagcac |
47858366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 47858675 - 47858564
Alignment:
| Q |
16 |
agttcaaattgaaaagaaagtttatgacgaactcgagtcaaacttcaa-gctaatctaatttttatcgagtcgaaccgagctaatctaaattcaacttag |
114 |
Q |
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| T |
47858675 |
agttcgaattgaaaagaaaatttatgacgaactcgagtcgaacttcaaagctaatataatttttatcgagtccaaccaagctaatctaaattcaacttag |
47858576 |
T |
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| Q |
115 |
ctcgactcattt |
126 |
Q |
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| T |
47858575 |
ctcgactcattt |
47858564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 31815953 - 31815898
Alignment:
| Q |
71 |
taatttttatcgagtcgaaccgagctaatctaaattcaacttagctcgactcattt |
126 |
Q |
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| T |
31815953 |
taatttttatcgagtcgatccgagcttagctaagttcgactcagctcgactcattt |
31815898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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