View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7523_high_38 (Length: 274)
Name: NF7523_high_38
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 48492240 - 48492480
Alignment:
| Q |
15 |
tatgaaagcaaaagtaccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaagcctcaatcaccaaaacaact |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48492240 |
tatgaaagcaaaagtgccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaagcctcaatcaccaaaacaact |
48492339 |
T |
|
| Q |
115 |
tcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatatctcatcttttacaccaaaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48492340 |
tcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatatctcatcttttacaccaaaca |
48492439 |
T |
|
| Q |
215 |
ttctgccatattccattcaataagatgataaagaaactact |
255 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48492440 |
ttctgccattttccattcaataagatgataaagaaactact |
48492480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 7795077 - 7794882
Alignment:
| Q |
5 |
tgtcgaagaatatgaaagcaaaagtaccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaagcctcaatcac |
104 |
Q |
| |
|
||||||| | ||||||||||||| ||||||| ||||| |||||||| ||||| | ||| |||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
7795077 |
tgtcgaaaactatgaaagcaaaactaccactaagatggccaacaacatgattagcagggtaaggtgcacgatcgcgtaaagctttgtaagcctcaatcat |
7794978 |
T |
|
| Q |
105 |
caaaacaacttcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatatctcatc |
200 |
Q |
| |
|
| ||| |||||||| || || || | ||||||||||| || || || ||||||||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
7794977 |
aagaactacttcatttgcagattttgaaagtccatattgctgtctcaagctccctaaattgtctagagatccttcaaacaagcagaatatctcatc |
7794882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University