View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_42 (Length: 257)
Name: NF7523_high_42
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 9470750 - 9470508
Alignment:
| Q |
1 |
caaaaatatcattcacagtacagtagcattatactatatctaattcatatgaatctcaggtcagcaacaagtttagttatgtacatagcaacaagttttc |
100 |
Q |
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| T |
9470750 |
caaaaatatcattcacagtacagtagcattatactatatctaattcatatgaatctcaggtcagcaacaagtttagttatgtacatagcaacaagttttc |
9470651 |
T |
|
| Q |
101 |
aaggccatttcgtgaatgtgtatagatagatagatagaaatcagtaattttccctaagtgcaatttcaattctgtgaatgatagagtatatactaaccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9470650 |
aaggccatttcgtgaatgtgtatagatagatagatagaaatcagtaattttccctaagtgcaatttcaattctatgaatgatagagtatatactaaccat |
9470551 |
T |
|
| Q |
201 |
tgcaactgaattttctaagccaacactaataacaaaatcaata |
243 |
Q |
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|
| T |
9470550 |
tgcaactgaattttctaagccaacactaataacaaaatcaata |
9470508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 653570 - 653630
Alignment:
| Q |
179 |
tgatagagtatatactaaccattgcaactgaattttctaagccaacactaataacaaaatc |
239 |
Q |
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| T |
653570 |
tgattgagtatatactaaccattgcaactgaattctctaagccagcactaataccaaaatc |
653630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 53692865 - 53692821
Alignment:
| Q |
20 |
acagtagcattatactatatctaattcatatgaatctcaggtcag |
64 |
Q |
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| T |
53692865 |
acagtagcattatactatatctaattcataagaatctcaggtcag |
53692821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 40375691 - 40375644
Alignment:
| Q |
172 |
ctgtgaatgatagagtatatactaaccattgcaactgaattttctaag |
219 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||| |||||| |
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| T |
40375691 |
ctgtgactgatagagtatatactaaccattacaactgaattctctaag |
40375644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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