View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_47 (Length: 249)
Name: NF7523_high_47
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43261164 - 43261386
Alignment:
| Q |
1 |
aagtcaaatggaggaagatatgaagaactctaagccacatgcacgcaagcaacgtggaagttcttgtggtgaatattgcatggtgcaatatagtaaagat |
100 |
Q |
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| T |
43261164 |
aagtcaaatggaggaagatatgaagaactctaagccacatgcacccaagcaacgtggaagttcttgtggtgaatattgcatggtgcaatatagtaaagat |
43261263 |
T |
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| Q |
101 |
gagagtgtgatctagttctccaaccatgtttatacacgtaatatgatgaatcggataaggaatctcatgttattcccactgctgttacgtttttgttggt |
200 |
Q |
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| T |
43261264 |
gagagtgtgatctagttctccaaccatgtttatacacgtaatatgatgaatcggataaggaatctcatgttattcccactgctgttacgtttttgttggt |
43261363 |
T |
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| Q |
201 |
atactaaattgaaatgtaacttac |
224 |
Q |
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|||| ||||||||||||||||||| |
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| T |
43261364 |
atac-aaattgaaatgtaacttac |
43261386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 43257554 - 43257582
Alignment:
| Q |
6 |
aaatggaggaagatatgaagaactctaag |
34 |
Q |
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| T |
43257554 |
aaatggaggaagatatgaagaactctaag |
43257582 |
T |
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