View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_48 (Length: 246)
Name: NF7523_high_48
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_48 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 29144596 - 29144832
Alignment:
| Q |
1 |
tgagaggtttgagaataaggtgaaattagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatactt |
100 |
Q |
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||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29144596 |
tgagaggtttgagaataaggtgaaattagattttttaaatccattcgcaaacctatacaattttcgtatttttggttttggtagtattaatggtatactt |
29144695 |
T |
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| Q |
101 |
tgtctctatgagcatgatcattcgggcaaaattatattgttgatgccagaaacctaggcaatcaagatccttccttcttacaacattggttcaattaagt |
200 |
Q |
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| T |
29144696 |
tgtctctatgagtatgatcattcgggcaaaattatattgttgatgccagaaacccaggcaatcaagatccttccttcttacaacattggttcaattaagt |
29144795 |
T |
|
| Q |
201 |
ggtttatcccagatgatgctaaggattttgttgatgt |
237 |
Q |
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| T |
29144796 |
ggtttatcccagatgatgctaaggattttgttgatgt |
29144832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 23216720 - 23216611
Alignment:
| Q |
2 |
gagaggtttgagaataaggtgaaattagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatacttt |
101 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| ||| ||||||| || |||||||| |||||| |||||||| ||||||| ||||||| |
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| T |
23216720 |
gagacgtttgagaataaggtcaaattagatttctcaaatccatatgcaaaccaattcaattttcaaatttttggggttggtagtgttaatggcatacttt |
23216621 |
T |
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| Q |
102 |
gtctctatga |
111 |
Q |
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||||| |||| |
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| T |
23216620 |
gtctccatga |
23216611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 17003 - 16829
Alignment:
| Q |
1 |
tgagaggtttgagaataaggtgaaattagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatactt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||| ||||||| || |||||||| |||||| ||| |||| | ||||| |||||| |
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| T |
17003 |
tgagaggtttgagaataaggtcaaattagatttctcaaatccatatgcaaaccaattcaattttcaaatttttggggttgatagtgtaaatggcatactt |
16904 |
T |
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| Q |
101 |
tgtctctatgagcatgatcattcgggcaaaattatattgttgatgccagaaacctaggcaatcaagatccttcct |
175 |
Q |
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|||||| |||| ||||| || ||| ||||||||||||||| |||| ||| ||||| ||||| |||||||| |
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| T |
16903 |
tgtctccatgaatatgatgctttgggagaaattatattgttgaacccagctacccaggcattcaaggtccttcct |
16829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 9568538 - 9568639
Alignment:
| Q |
5 |
aggtttgagaataaggtgaaattagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatactttgtc |
104 |
Q |
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||||||||||| || || ||||||||||| ||||| |||| ||||||| | |||||||||||||||| |||||||||||||||||| | |||||||| |
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| T |
9568538 |
aggtttgagaacaaagtacaattagatttcacaaatccatttgcaaaccgtttcaattttcgtatttttggttttggtagtattaatggcacactttgtc |
9568637 |
T |
|
| Q |
105 |
tc |
106 |
Q |
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|| |
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| T |
9568638 |
tc |
9568639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 9582708 - 9582604
Alignment:
| Q |
5 |
aggtttgagaataaggtgaaattagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatactttgtc |
104 |
Q |
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||||||||||| || || ||||||||||||||||| ||| ||| ||| | ||| |||||||||||| ||||||||||||||||| | | |||||| |
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| T |
9582708 |
aggtttgagaacaaagttcaattagatttctcaaatgcatatgcagaccgtttcaaatttcgtatttttggctttggtagtattaatggcacattttgtc |
9582609 |
T |
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| Q |
105 |
tctat |
109 |
Q |
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||||| |
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| T |
9582608 |
tctat |
9582604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 9588403 - 9588299
Alignment:
| Q |
5 |
aggtttgagaataaggtgaaattagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatactttgtc |
104 |
Q |
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||||||||||| || || ||||||||||||||||| ||| ||| ||| | ||| |||||||||||| ||||||||||||||||| | | |||||| |
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| T |
9588403 |
aggtttgagaacaaagttcaattagatttctcaaatgcatatgcagaccgtttcaaatttcgtatttttggctttggtagtattaatggcacattttgtc |
9588304 |
T |
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| Q |
105 |
tctat |
109 |
Q |
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||||| |
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| T |
9588303 |
tctat |
9588299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 9573692 - 9573772
Alignment:
| Q |
26 |
ttagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatactttgtctc |
106 |
Q |
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||||||||||||||| || ||||||| | ||| |||||||||||| |||||||||||||||||| | | |||||||| |
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| T |
9573692 |
ttagatttctcaaatccacatgcaaaccgtttcaagtttcgtatttttggttttggtagtattaatggcacattttgtctc |
9573772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 42445635 - 42445772
Alignment:
| Q |
3 |
agaggtttgagaataaggtgaaattagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatactttg |
102 |
Q |
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||||||| ||||||||||| |||||||||| ||||||| ||| ||| | | || |||||||||||||| |||||||||||||||||| | ||| || |
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| T |
42445635 |
agaggttcgagaataaggtcaaattagattactcaaatccatctgcacatccatttgattttcgtatttttggttttggtagtattaatggcacactctg |
42445734 |
T |
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| Q |
103 |
tctctatgagcatgatcattcgggcaaaattatattgt |
140 |
Q |
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|||| |||| ||||| ||| ||||||||| |||||| |
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| T |
42445735 |
tctccatgaatatgataattatggcaaaattgtattgt |
42445772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 7793170 - 7793252
Alignment:
| Q |
23 |
aaattagatttctcaaattcattcgcaaacctatacaattttcgtattttttattttggtagtattaatggtatactttgtct |
105 |
Q |
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|||||||||| ||||||| |||| | ||||| || |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7793170 |
aaattagattactcaaatccatttggaaaccaattttgttttcgtattttcggttttggtagtattaatggtatactttgtct |
7793252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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