View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_high_54 (Length: 236)
Name: NF7523_high_54
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43261170 - 43260948
Alignment:
| Q |
1 |
ttgacttatagttacttcaatatctagcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacagaggagggaaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43261170 |
ttgacttatagttacttcaatatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaaggagggaaa |
43261071 |
T |
|
| Q |
101 |
aacatggctacacaagctctagtgtcgtcatcatctcttacttttgcagctgaagctgtgaggcagagttttggagcaagatcactcccatcttcaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43261070 |
aacatggctacacaagctctagtgtcgtcatcatctcttacttttgcagctgaagctgtgagacagagttttggagcaagatcactcccatcttcaatag |
43260971 |
T |
|
| Q |
201 |
ggtcttctagaaaaggttccttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
43260970 |
ggtcttctagaaaaggttccttt |
43260948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 43257554 - 43257352
Alignment:
| Q |
21 |
tatctagcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacagaggagggaaaaacatggctacacaagctct |
120 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |
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| T |
43257554 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaagaagggaaaaacatggctacacaagttct |
43257455 |
T |
|
| Q |
121 |
agtgtcgtcatcatctcttacttttgcagctgaagctgtgaggcagagttttggagcaagatcactcccatcttcaatagggtcttctagaaaaggttcc |
220 |
Q |
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| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
43257454 |
attgtcgtcgtcatctcttacttttgcagctgaagctgtaagacagagttttggagcaagatcactcccatcttcaattgggtcttctagaaaaggatcc |
43257355 |
T |
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| Q |
221 |
ttt |
223 |
Q |
| |
|
||| |
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|
| T |
43257354 |
ttt |
43257352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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