View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7523_low_1 (Length: 843)
Name: NF7523_low_1
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_1 |
 | |
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| [»] chr6 (7 HSPs) |
| |
|
| [»] scaffold0299 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 323 - 843
Target Start/End: Original strand, 6682142 - 6682661
Alignment:
| Q |
323 |
ctactgtcctacattagtttacatatttgaagtgccacattgatggcttttcattcaagattcttcaacaatatttaggctcctaactctgtcatatgaa |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6682142 |
ctactgtcctacattagtttacatatttgaagtgccacattgatggcttttcattcaagattcttcaacaatatttaggctcctaactctgtcatatgaa |
6682241 |
T |
|
| Q |
423 |
gtatatcaaaatcaaacaaacaaattaacagtttggtgctggtacttttaccactttggctctcagattcactattttgtccgggacatgagaaatctga |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6682242 |
gtatatcaaaatcaaacaaacaaattaacagtttggtgctggtacttttaccactttggctctcagcctcactattttgtccgggacatgagaaatctga |
6682341 |
T |
|
| Q |
523 |
gcaaatcttctcctgtaaagcacttgcagttgcattgttctaagagtggacaatcccatatttttagttcgaccaagttattaaggcgagatattcctca |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6682342 |
gcaaatcttctcctgtaaagcacttgcagttgcattgtcctaagagtggacaatcccatttttttagttcgaccaagttattaaggcgagatattcctcg |
6682441 |
T |
|
| Q |
623 |
tggcaacgacttcaaataatggcatccaactatctctatacg-tttaagtgatagtaggtcaaatatcttatcaggcaaaatagttgagttaccaagaga |
721 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6682442 |
tggcaacgacttcaaataatggcatccaactatctctatacgttttaagtgatagtaggtcaaatatcttatcaggcaaaatagttgagttaccaagaga |
6682541 |
T |
|
| Q |
722 |
tattatgannnnnnncaaagaaggaaagcagtcaaaccaaaactccaacttatccacatttacaagtttaagatactcaagagaagtaaggttttgctga |
821 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |
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|
| T |
6682542 |
tatcatgatttttttcaaagaaggaaagcagtcaaaccaaaactccaacttatccacatttacaagtttaagattctc--gagaagtaaagttttgctga |
6682639 |
T |
|
| Q |
822 |
aacagagatggcaaagaatcga |
843 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
6682640 |
aacatagatggcaaagaatcga |
6682661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 6681849 - 6682125
Alignment:
| Q |
15 |
gacatcagtgttgtgattttaatctttccttttgtgtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaa |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6681849 |
gacataagtgttgtgattttaatctttccttttgtgtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaa |
6681948 |
T |
|
| Q |
115 |
taagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaactattcaattcaagtctcattttaagagacttgaaatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
6681949 |
taagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaaccattcaattcaagtctcattttaagagacttgaaatt |
6682048 |
T |
|
| Q |
215 |
agagattcaattttttattgttgtgaatgtatgtatattcaaggattgagagctaagctctgactattcaattcaagtctc |
295 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6682049 |
agagattcaattttgtattgttgtga----atgtatattcaatgattgagagctaagctctgactattcaattcaagtctc |
6682125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 6771416 - 6771257
Alignment:
| Q |
82 |
ttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaactatt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
6771416 |
ttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttttaaaagtatattcaatggttgagaggctaagctccaattatt |
6771317 |
T |
|
| Q |
182 |
caattcaagtctcattttaagagacttgaaattagagattcaattttttattgttgtgaatgtat |
246 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | |||||||| |||| |||||||||||| |
|
|
| T |
6771316 |
caat-----tctcattttaagagacttgaaattagaaaatcaattttgtatttttgtgaatgtat |
6771257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 6765105 - 6765026
Alignment:
| Q |
168 |
aagctccaactattcaattcaagtctcattttaagagactt-gaaattagagattcaattttttattgttgtgaatgtat |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||| | |||||||| ||||||| ||||||||| |
|
|
| T |
6765105 |
aagctccaactattcaattcaagtctcattttaagagacttagatattagaaaatcaattttgtattgttttgaatgtat |
6765026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 6682044 - 6682130
Alignment:
| Q |
112 |
aaataagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaactattcaattcaagtctcatttt |
199 |
Q |
| |
|
|||| |||||||||||||||| ||||||| || |||||||||||| ||||||| | |||||| ||||||||||||||||||| |||| |
|
|
| T |
6682044 |
aaattagagattcaattttgtattgttgtgaatgtatattcaatgattgagag-ctaagctctgactattcaattcaagtctcttttt |
6682130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 6771249 - 6771210
Alignment:
| Q |
340 |
tttacatatttgaagtgccacattgatggcttttcattca |
379 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6771249 |
tttaaatatttgaagtgccacattgatggcttttcattca |
6771210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 6670987 - 6671037
Alignment:
| Q |
105 |
tctcttaaaataagagattcaattttgtgttgttgtaaaagtatattcaat |
155 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||||| || ||||||||||| |
|
|
| T |
6670987 |
tctcttaaaacaagagaatcaattttgtattgttgtgaatgtatattcaat |
6671037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 120; Significance: 6e-61; HSPs: 3)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 17488 - 17714
Alignment:
| Q |
15 |
gacatcagtgttgtgattttaatctttccttttgtgtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaa |
114 |
Q |
| |
|
||||| |||||||| ||||| ||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||||| || ||||||||| |
|
|
| T |
17488 |
gacataagtgttgtaattttcatccttccttttctgtatataaatttgtttatgtaacatatataggttaggaataggctcattattcatactcttaaaa |
17587 |
T |
|
| Q |
115 |
taagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaactattcaattcaagtctcattttaagagacttgaaatt |
214 |
Q |
| |
|
| ||||| |||||||||||||||||| || | ||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
17588 |
tgagagactcaattttgtgttgttgtgaatatttattcaatggtagagagtcaaagctccaactattaaat-----tctcattttaagagacttgaaatt |
17682 |
T |
|
| Q |
215 |
agagattcaattttttattgttgtgaatgtat |
246 |
Q |
| |
|
||| | |||||||| ||||||| ||||||||| |
|
|
| T |
17683 |
agaaaatcaattttgtattgttatgaatgtat |
17714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 17264 - 17413
Alignment:
| Q |
15 |
gacatcagtgttgtgattttaatctttccttttgtgtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaa |
114 |
Q |
| |
|
||||| |||||||| ||||| ||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||||| || ||||||||| |
|
|
| T |
17264 |
gacataagtgttgtaattttcatccttccttttctgtatataaatttgtttatgtaacatatataggttaggaataggctcattattcatactcttaaaa |
17363 |
T |
|
| Q |
115 |
taagagattcaattttgtgttgttgtaaaagtatattcaatggttgagag |
164 |
Q |
| |
|
| ||||| |||||||||||||||||| || | ||||||||||| ||||| |
|
|
| T |
17364 |
tgagagactcaattttgtgttgttgtgaatatttattcaatggtagagag |
17413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 17722 - 17761
Alignment:
| Q |
340 |
tttacatatttgaagtgccacattgatggcttttcattca |
379 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17722 |
tttaaatatttgaagtgccacattgatggcttttcattca |
17761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 9e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 36845862 - 36845586
Alignment:
| Q |
21 |
agtgttgtgattttaatctttccttttgtgtatataaatttgattatgta---acatacataggttagg-------aataggcttattattgatt-ctct |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| ||||||||| ||| |||| |
|
|
| T |
36845862 |
agtgttgtgattttcatctttccttttgtgtatataaatttgattat-tatgtatatacataggttaggggttaggaatagccttattattcatttctct |
36845764 |
T |
|
| Q |
110 |
taaaataagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaactattcaattcaagtctcatttta-agagactt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |||| ||| |
|
|
| T |
36845763 |
taaaataagagattcaattttgtgttgttgtgaatatatattcaatggttgagagcctaagctccaactattcaatttaagtctcatttttgagaggctt |
36845664 |
T |
|
| Q |
209 |
gaaattagagattcaattttttattgttgtgaatgtatgtatattcaaggattgagagctaagctctgactattcaattcaa |
290 |
Q |
| |
|
||||||||| | |||| ||| ||||||||| ||||||| ||| || | ||||||||||||||| |||||||||||||| |
|
|
| T |
36845663 |
gaaattagaaaatcaagtttgtattgttgtaaatgtat----attaaatggttgagagctaagctccaactattcaattcaa |
36845586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 6160300 - 6160127
Alignment:
| Q |
16 |
acatcagtgttgtgattttaatctttccttttgtgtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaat |
115 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
6160300 |
acataagtgttgtgcttttcatctttccttttgtgtatgtaaatttgattatgtat-atacataggttaggaatagccttattattcattctcttaaaat |
6160202 |
T |
|
| Q |
116 |
aagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaactattcaattcaagt |
191 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||| || |||||| ||||| |||||||||| |
|
|
| T |
6160201 |
aagagattcaattttgtgttgttgtgaatgtatattcaatggttgaga-gctaagctcaaactacacaattcaagt |
6160127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 6160112 - 6160059
Alignment:
| Q |
326 |
ctgtcctacattagtttacatatttgaagtgccacattgatggcttttcattca |
379 |
Q |
| |
|
|||| |||||| | |||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
6160112 |
ctgttctacatcaatttaaatgtttgaagtgccacattgatggctttacattca |
6160059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 6160205 - 6160127
Alignment:
| Q |
210 |
aaattagagattcaattttttattgttgtgaatgtatgtatattcaaggattgagagctaagctctgactattcaattcaagt |
292 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||| |||||||||| | ||||||||||||||| |||| |||||||||| |
|
|
| T |
6160205 |
aaataagagattcaattttgtgttgttgtgaat----gtatattcaatggttgagagctaagctcaaactacacaattcaagt |
6160127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 46524612 - 46524755
Alignment:
| Q |
105 |
tctcttaaaataagagattcaattttgtgttgttgtaaaagtata--ttcaatggttgagaggcaaagctccaactattcaattcaagtctca---tttt |
199 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||| ||| || |||| ||||||||||||||| | |||||||||||| || ||| | ||||| |||| |
|
|
| T |
46524612 |
tctcttaaaacaagagaatcaattttgtattgctgtgaatatatacattcaatggttgagagcctaagctccaactactctatttatgtctcccattttt |
46524711 |
T |
|
| Q |
200 |
aagagacttgaaattagagattcaattttttattgttgtgaatg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46524712 |
aagagacttgaaattagagattcaattttgtattgttgtgaatg |
46524755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 46524722 - 46524808
Alignment:
| Q |
112 |
aaataagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaactattcaattcaagtctcatttt |
199 |
Q |
| |
|
|||| |||||||||||||||| ||||||| || | | |||||||||| |||| || |||||| |||| ||||||| |||| ||||||| |
|
|
| T |
46524722 |
aaattagagattcaattttgtattgttgtgaatgcaaattcaatggtggaga-gctaagctctaactcttcaattgaagtttcatttt |
46524808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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