View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_10 (Length: 462)
Name: NF7523_low_10
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 14340243 - 14340675
Alignment:
| Q |
11 |
gtgagatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340243 |
gtgacatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
14340342 |
T |
|
| Q |
111 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340343 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattagctatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
14340442 |
T |
|
| Q |
211 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
14340443 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtgataattagcaaccaaagaaattaagcctcgttgatgcattattatcaagtttggcga |
14340542 |
T |
|
| Q |
311 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcatta-nnnnnnnnnnnnnncaacacttgca |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14340543 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcattattttttttcctttttcaacacttgca |
14340642 |
T |
|
| Q |
410 |
tgtcatctggttcaatcatgggttgagtcgataa |
443 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
14340643 |
tgtcatctggttcaatcat-ggttgagtcgataa |
14340675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 3601373 - 3601742
Alignment:
| Q |
11 |
gtgagatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
3601373 |
gtgacatgaaaaagaagtgaatggtgaaaaactgaacctat----gtgatgtcatttatagggacagaaccacctctcagaagtggcgttccaaggactg |
3601468 |
T |
|
| Q |
111 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3601469 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggctatggtctgcagaagccgaactcttcagaggaagaagttagaaggtc |
3601568 |
T |
|
| Q |
211 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3601569 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
3601668 |
T |
|
| Q |
311 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcatta |
384 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3601669 |
ttggtttgattccagttacattgtagtatgattgaaccaagttgaaccggtattggtttaattgattttcatta |
3601742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 101 - 372
Target Start/End: Original strand, 3568467 - 3568732
Alignment:
| Q |
101 |
ccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaag |
200 |
Q |
| |
|
||||||| | |||||||||| || ||||||||||| |||||||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||| |
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|
| T |
3568467 |
ccaaggactaaagatttctctaaggccatttacacaattgatattgcacaaaatgatattggctttggtctgcagaag------tcttcagaggaacaag |
3568560 |
T |
|
| Q |
201 |
ttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatca |
300 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3568561 |
ttagaaggtcaattcctgacatcttgagccaattctcccaagcagtgcaggtaattagcaaccaccaaagaaattaagccttgttgatgcattattatca |
3568660 |
T |
|
| Q |
301 |
agtttggcaattggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaat |
372 |
Q |
| |
|
||||||||||||||||||||| | |||| |||| |||||||||| ||||||| |||| |||||||||||| |
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|
| T |
3568661 |
agtttggcaattggtttgattacggttacattgcagtatgattgcaccaagttgaacatctattggtttaat |
3568732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 3590710 - 3590816
Alignment:
| Q |
277 |
agccttgttgatgcattattatcaagtttggcaattggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgat |
376 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| |||| |||| |||| ||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
3590710 |
agccttgttgatacattattattaagtttggcaattggtttgtttcctgttacattgcagtatgattgaactaagttgaaccggtattggtttaattgat |
3590809 |
T |
|
| Q |
377 |
tttcatt |
383 |
Q |
| |
|
||||||| |
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|
| T |
3590810 |
tttcatt |
3590816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 3590634 - 3590708
Alignment:
| Q |
181 |
gaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
255 |
Q |
| |
|
|||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3590634 |
gaacacttcaaaggaacaagttagaaggtcatttcctgatatcttgagccaattcttccaagcagtgcaggtaat |
3590708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 64 - 286
Target Start/End: Original strand, 1408690 - 1408906
Alignment:
| Q |
64 |
atttatagggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggt |
163 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| |||||||||| ||| || ||||| || ||| ||||||| ||||||||||||||||||||| ||| |
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|
| T |
1408690 |
atttatagggacagaatcacctttcaaaagtggtcttccaaggaatgaggaattctctaaggccctttacacaattgatattggacaaaatgatcttgcc |
1408789 |
T |
|
| Q |
164 |
tatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagca |
263 |
Q |
| |
|
|||| | ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |
|
|
| T |
1408790 |
attggtttacagaa------cacttcagaggaacaagttaaaaggtcaattcctgatatcttgagccaattctcccaagcagtgcaggtaatttgtaacc |
1408883 |
T |
|
| Q |
264 |
accaaagaaattaagccttgttg |
286 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
1408884 |
accaaagatattaagccttgttg |
1408906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 255
Target Start/End: Original strand, 1416682 - 1416861
Alignment:
| Q |
70 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggt |
169 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||| |||||||| || ||| ||||||| ||||||||||||||||||||| ||| | ||||| |
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|
| T |
1416682 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggatttctctaaggccctttacacaattgatattggacaaaatgatcttgctcatggt |
1416781 |
T |
|
| Q |
170 |
ctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
255 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||||| || |||||| | ||| ||||| ||||| ||||||| |
|
|
| T |
1416782 |
tttca------atacacttcagaggaacaagttcaaaggtcaattcctgaaatattgagcaatttctcccaatcagtgaaggtaat |
1416861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 255
Target Start/End: Original strand, 1411832 - 1412011
Alignment:
| Q |
70 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggt |
169 |
Q |
| |
|
|||||| ||||| ||||||| |||||| |||||| || ||| || ||||| || ||| ||||||| ||||||||||||||||||||| ||| |||||| |
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|
| T |
1411832 |
agggacggaaccgcctctcaaaagtggtcttccagggcctgaggacttctctaaggccctttacacaattgatattggacaaaatgatcttgcctatggt |
1411931 |
T |
|
| Q |
170 |
ctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
255 |
Q |
| |
|
| | | | || ||||||| ||| ||||| |||||||||||||||| || ||||||||||| ||||||||||| ||||||| |
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|
| T |
1411932 |
tttc----gac--acacttcagaagaacaagttcaaaggtcaattcctgaaatattgagccaattgtcccaagcagtgaaggtaat |
1412011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 1409071 - 1409118
Alignment:
| Q |
312 |
tggtttgattccagttatattgtagtatgattgaaccaagtggaaccg |
359 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
1409071 |
tggtttgattccgattatattgcagtatgattgaaccaagttgaaccg |
1409118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 1421141 - 1421228
Alignment:
| Q |
70 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgat |
157 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||| || |||| | ||| ||||||| ||||||||||||| ||||||| |
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|
| T |
1421141 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggacttctgtacggccctttacacaattgatattggactaaatgat |
1421228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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